XLOC_017899 (sirt5)


Basic Information

Item Value
gene id XLOC_017899
gene name sirt5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 7052870 ~ 7069612 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035320
ATCGAATGCAATCACCGGTAACTCATTTCCATGGCTATTTTATAGAAAATTACTGTGGTGCATTTTTCTGTTGGGTTATGAAATACCAGTAATTTTAAACACGTTTAAACCTTTATACTTTTTAAAGTACACATTTTGTCGATATCTTGAAAAACGTGTGTAGATTTGAGCGTGACTCAATGGACGTGTTGTCTTTCTGGGCCACCAAACGCCCCTCCGCGGTAACAAAAAGTGCAAGTTAATTGTATCATTTGTCGTCTCGTGGTTCGTGTTGTGCGTACAATTTTGTGTTAAAGCCGATGGCAGCGCACACGTCTTCCATGGGCTCACGATGACAGCAACTGAGTGGAtgaaataaacacagtttttatCATCTTCTCTGCTGGACAATCCATCTGACGAGTCAACAGCACAACACACAGCTGTGCAGCGTGACCTTTTCTTTCAATGATTGTGCGCCAGTTGTGGTGTAGTAGAGGTTCGACGTCTCACCTGTGTGCGGCAGTCAGACTCAACTGGAGATCTCCAAAGATGACCAGACCAAGCTCGGATTTAACAGCATTTCGTGAGCACTTTGCTAAAGCGAAGCACATTGCTATCATTACGGGGGCTGGAGTGAGTGCAGAGAGTGGCGTACCAACCTTTAGAGGACCGGGGGGCTTCTGGAGGAAATGGCAGGCGCAGGATTTAGCAACACCTGAAGCTTTTTCTCGAGATCCTTCTTTAGTATGGGAGTTTTACCATTACAGGCGTGAGGTAATGCGCAGTAAGATGCCGAATCCAGCACATCTGGCTATAGCAGAGTGTGAGGCTCGTCTCGGCCAGCAGGGGCGCTCTGTGGTGATCATCACCCAAAACATTGATGAACTGCACCATCGGGCTGGGTCTAAACATGTCTATGAGATCCACGGTAGTCTGTTTAAAACCCGCTGTATGAGCTGTGGAGAAGTCAAAGCAAACCACAAGAGCCCAATTTGTCCTGCTCTGGATGGAAAAGGagCACCCGACCCGAATACTAAGGAAGCCAGAATTCCAGTCGAGCTGCTGCCTAGGTGCGAAAGGAAGAGCTGTAACGGATTGCTGAGGCCTCATGTGGTTTGGTTTGGAGAAACGCTGGACTCAGATATTCTCACTGCTGTGGAGCGCGAGCTGGAAAAGTGTGATCTCTGTTTAGTGGTGGGCACATCCTCCATAGTTTACCCAGCGGCCATGTTCGCCCCTCAGGTGGCATCTCGGGGAGTGCCTGTAGCCGAATTCAACATGGAGTGCACACCTGCTACCCAACGCTTCAAATATCACTTTGAGGGTCCTTGTGGCTCGACGTTGCCCCCCGCGCTGGAACGCCATGAGAGCGAGGCTGTTTAAGGGGAAAGAAGGCATGACCCATCTGTTCGCCGCATTGAGCACTTTAGCTAAGATGGTTCAGGATTGGCTCATGCCTTTGTGGGATTGGTTTGTGTGAAGATTTACTGCTAAATGATTGGCTGGAGTTTAGGTTTGTTAAATGACTTGTGAGTGCTTGCATGGCCTATGTTTTGTGTTTGGCTGTGTTTCTTAACTATATAAATGGTACgatcaaaaagtcatgacaacctATTTAATATGTTAATCAGGTGTCAGTTTTAGTTAAAGTGCACCTATTTTactccttttacaagatgtaagatacgactttggtgtcttcagaatgtgtctgtttaGTTGCAGCCCAAAATACCCGTCAGattattatataatgtagaatatgcccattttggtgtctgatgACAGTATAGGTGTTTTAGTAGCCTGTGGCTTCAAAtccaaatgagctggttctccctaTCCACCGCTCACACGTGCTTGTCTGCTTCTCCTGTGTCAcagcagataaacagcagtcagtgatagagacaaacacggatgaagctgaaataaagccacaaattaaaaatacagaGTAATTTAA

Function

symbol description
sirt5 Enables acyl binding activity and heterocyclic compound binding activity. Predicted to be involved in protein deacylation and regulation of ketone biosynthetic process. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol and mitochondrion. Is expressed in liver and retina. Orthologous to human SIRT5 (sirtuin 5).

GO:

id name namespace
GO:0036047 peptidyl-lysine demalonylation biological_process
GO:0036049 peptidyl-lysine desuccinylation biological_process
GO:0061698 protein deglutarylation biological_process
GO:0010566 regulation of ketone biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000035 acyl binding molecular_function
GO:0036054 protein-malonyllysine demalonylase activity molecular_function
GO:0036055 protein-succinyllysine desuccinylase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0061697 protein-glutaryllysine deglutarylase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
ko00760 Nicotinate and nicotinamide metabolism
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040718-349 Enables acyl binding activity and heterocyclic compound binding activity. Predicted to be involved in protein deacylation and regulation of ketone biosynthetic process. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol and mitochondrion. Is expressed in liver and retina. Orthologous to human SIRT5 (sirtuin 5).

Ensembl:

ensembl_id ENSDARG00000039684

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035320 True 1948 mRNA 0.46 10 7052870 7069612

Neighbor

gene id symbol gene type direction distance location
XLOC_017898 adcy1a coding downstream 52645 6894886 ~ 7000225 (-)
XLOC_017897 igfbp1a coding downstream 240182 6808774 ~ 6812688 (-)
XLOC_017896 CT583652.1 coding downstream 469200 6581799 ~ 6583670 (-)
XLOC_017895 mcm3l coding downstream 520408 6516523 ~ 6532462 (-)
XLOC_017894 NA coding downstream 572357 6478510 ~ 6480513 (-)
XLOC_017900 si:ch211-121a2.2 coding upstream 1022 7070634 ~ 7080470 (-)
XLOC_017901 si:ch211-121a2.4 coding upstream 52978 7122590 ~ 7133546 (-)
XLOC_017902 NA coding upstream 68451 7138063 ~ 7139142 (-)
XLOC_017903 dhcr24 coding upstream 79488 7149100 ~ 7176810 (-)
XLOC_017904 NA coding upstream 122271 7191883 ~ 7211196 (-)
XLOC_017928 CU539064.1 misc upstream 2983793 10053405 ~ 10053701 (-)
XLOC_017891 NA non-coding downstream 838113 6212846 ~ 6214757 (-)
XLOC_017888 CABZ01062796.1 non-coding downstream 1017800 6028201 ~ 6035070 (-)
XLOC_017887 CABZ01062797.1 non-coding downstream 1029761 6012451 ~ 6023109 (-)
XLOC_017907 NA non-coding upstream 542543 7612155 ~ 7638652 (-)
XLOC_017909 NA non-coding upstream 882170 7951782 ~ 7953182 (-)
XLOC_017913 NA non-coding upstream 1053081 8122693 ~ 8443425 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_01894807_01902190 SIRT5 coding CI01000051 null 1894319 ~ 1902190 (-)