XLOC_018080


Basic Information

Item Value
gene id XLOC_018080
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25307795 ~ 25311454 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036839
ccccacctactgaattgattgacagccgcgtattaacatgtctccgtagtaacgcatataatcaacaagacaggacgtgtgcaaagcaacaGCGATTAAAAGAactgttcagctcgctgtgatcatcagtgatcatcaaatgtgatcaagaataagttttacaaatcgtcaccttggaatattaatgttttatcttcgctctgaatgattttgagatattgagctccAAAGTTTTTGCTTTCtctagcaaacagtatgtgtgtaacatttttgtttttaaatgaaaagacttacaatgtaaataattactaaaaaaacatcccacaatgtaaataagttgtcaattaataagactatgtcaataactcagttttgtcaaaaatgtcagatagaaccttgtaattctaaggtgacaaagtttaaaatgtttttaaaacagtgcatgtttgtaatgaattacagcgattttaccatccttacttcatcagcacagctgcaTATCAGCACAATAATAAAAGAAGATGCTACAATCCCGGTttataaatcaggtttattttgtacagtaacaTAACAAATATCCATACAGTACTGGATATTTGCCATGCAAAAGCAATACAAAGTTAAACGTgcgaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtctgctgtgtgtgtgtgtctgctgtgtgtgtgcatgaactttgaaAGGACATTGTGTATGACtaatcattgcagaaaggctggAATTTACTCCACAGCAAATACATCAAACAATCATTgttaaagttcttactgtagtatttctcacaaatgtttaTGTCTGTTACTGTGCTGGTTATCTGACTCAGCTAAGGCAGAGACACTCTAACAGGCATGTCGAAATGGTAGgCAGGGATAACCAGCAATAAAGGCAcatgcaacaaaaacagctacattgtgtttagagcagaaaattacaaacttctgaaaggtatagtgaataatctgatgggtttttttttagctgaaactttacagacacattttggagaccagaagacttatcttaaatctaaAATGATTACTGGGACtatagctaaaataaaaataagaccaAAAACAAAATGTACGTAACacaataaagtaaaaagtaaactaaattagtcaaacaaaacatttaaaatgaaggTTAATTTCAAATATTGATAGATATCATAGTAGAAATAACAGcctattattttttttgcctaaaaatatttcacaattttaccagTTTATGTTtgtaacataataaaatgtaaagtgACACaggcttattatttatttgatgagGTGTAATTGTCTAATTGACTTCTACAGTACAAATACACAGTCATACCTTTAAGTCTTCAACTTAATTTAAACATCTCATTGCCGTTCTGAATCCATCACACAACCTTCTATACAGAACACATTCATTGATTAGCCCACAGTCAATCTTTATCAGCCCATTTGTTTTTGACATGTGACCGGGACAGGGGGTTTTACACATTCTCATGTTTGGTCCTGATGACGTCTGAAGTGATGTCTGAATGTTGAATACGTGTTTGCTCTACACTCATTCTCACAGCTCCCTGTTGACTTCTCTCACCATAAACTCACACTCACACAGTCCTCCATCCTCAGGCCAGACTCGCAAAGAATCCCCAGTACAGACAGAGACTGAGAGCGAACAGTCATAAAAGACTTAACCCGGCTTTCCGATACAAATACAAATCATGCTCTTAACTTACGTTGTACATTACTTAATGATGAAGCAATGCTCGTTTCCTAAGCCAGCATTGTAGATCACCTGGTTTTACAGTAGTAACTTTTATTCACGCAATCTGTAGTCCAAGCCCAGGTTAAGGTCCATGCTGTAGCGTCTGCTGATGTTTAGACATGTCTGGAATCCCAAAATCCTTTCCATCCCACTCTGTCTGGTACCTCAGGTCTGTGTTATTGGGCCGTGGCCTTCGCTCCTGTCAAAGGGAAGCAGAGGAACCGGTCGGTGAGAGCTGGCAATGTGTCAGACGGCACTGTTTCCAGCTGCTGTTGCTGAAGAAAAACGAGACTCTGGAAATAAAACCAGACAGACCCAAGTGCCTTAATAACTCACAGCAGGGCCTACtagggggaaaaaaataacacTTATATATAGAATGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036839 True 2208 lncRNA 0.37 2 25307795 25311454

Neighbor

gene id symbol gene type direction distance location
XLOC_018079 epha7 coding downstream 344703 24817118 ~ 24963092 (-)
XLOC_018078 NA coding downstream 575486 24729131 ~ 24732309 (-)
XLOC_018077 NA coding downstream 852866 24448007 ~ 24454929 (-)
XLOC_018076 CR385053.3 coding downstream 864115 24435671 ~ 24443680 (-)
XLOC_018075 NA coding downstream 1035332 24234926 ~ 24272463 (-)
XLOC_018081 itsn2a coding upstream 47610 25359064 ~ 25436389 (-)
XLOC_018082 mrpl19 coding upstream 129060 25440514 ~ 25445246 (-)
XLOC_018083 si:dkey-183n20.15 coding upstream 161602 25473056 ~ 25486384 (-)
XLOC_018084 cyp2n13 coding upstream 203805 25515259 ~ 25522911 (-)
XLOC_018085 cyp2ad6 coding upstream 214348 25525802 ~ 25533739 (-)
XLOC_017928 CU539064.1 misc downstream 15254094 10053405 ~ 10053701 (-)
XLOC_018074 NA non-coding downstream 1119164 24187977 ~ 24188631 (-)
XLOC_018060 NA non-coding downstream 2111137 23194788 ~ 23196658 (-)
XLOC_018088 BX322665.2 non-coding upstream 288651 25600105 ~ 25605285 (-)
XLOC_018092 CR352243.2 non-coding upstream 399337 25710791 ~ 25712415 (-)
XLOC_018102 BX470119.1 non-coding upstream 807885 26119339 ~ 26119459 (-)
XLOC_018103 BX470119.2 non-coding upstream 883272 26194726 ~ 26194841 (-)
XLOC_018107 NA non-coding upstream 1134449 26445903 ~ 26458381 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G464881 NA non-coding CI01000325 null 4429487 ~ 4429657 (+)