XLOC_018077


Basic Information

Item Value
gene id XLOC_018077
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 24448007 ~ 24454929 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036475
TTTTTCTAACTGCCCCCGTAGACTCAGGTACCCAGTTTCACTGAAGATATCCTCTTCCTCTCCTGTTATAGGTCGTGAAGGAGGACAGAGGGCCTCCCTTGCAGCTCTTTTAGCCTCCTCACTTATGGCTAGCGGAGCGGTCCTAAATTTGATGGTgcctttatttacaaataaacatcGGCGGCCATATTTGTTTGAGATggttacattttttacaatatatgaGTGTCCCTCTTCAAATTCAGGGTCACTGCCGTTTTTTATGGACAGATAAACTGCATCACCATCCGTAAGGGCACATAAAGATGTGACTTTGTAGGTGtcaacaattattttgttttcatgtttaataaatgtcacAGCCTTTTGGCTACTGTGCACTTTAACACAGGTGATGTGCAGTGGTGGTGGGCGGCTGTACGGTGTTGCCAtcCTCAGAAGTATGCTGTCTGTTGTACAACTGAAAGAATTGACAGTGATGTGTATCCAGTCAGAAGCGAGACATCCATCACCAAGGCTCATGACGTCAGATGGAAACCTTTATCGA
>TCONS_00036838
GACTATCTTTGGCGCGTCTGCTAAATAGGTTAATAACCCTCTGATGCTGAGTGAGCTTCTCTTTCATTATGACCCGGGGCGGACTTACCAAAGACAGCACCAGGACATTTCACGTTGACCTAATGGTCAATCTGGAGTGCCACCGTGAATCTGGACCAATCGCCCACCACCAAGCGTAAAAGGCAGTCCATTGAGTCCTGAGTGTCTTCTGGATGGACCTGATTGGGGTCAGCAGATCCTCCACTGTGAACATCTGGAGGGCCCTGATCCGCATCAGCAGATCCTCCACTGGGAACATATGGAGGAACCTGATCCACACTGGCAGATCCTCCACTAGGAACGTCTGGAGGGACCTGATCCACACCAGCAGATCCTCCACAAGGTACGTCAGGAGGGACCTGTTCCACACCAGCAGATCCTCCACAAGGTACATCTGGAGGGACCTGTTTCACACTGGCAGGTTCCACGTGGAGGACGCTTCCACAGATGTGCctgagttttaattgaagtggGAGCTGGTTTGCCAGCTCCTCAATAGTGCCTGCATAGAAATGTACAGGCACTATGTACTCATCCATATGGCTATCCAGGAGGATGAGCTTGTCGTGCATCTCTGACACTCCAACGATCTCAAGAACTGCCTCCTGGATATCCCTATCAAtaagctgaaaaacaaaaaaaatttagaaaaGGTGACTGAGCTCAATGATGTCCCCGACATAGAGCTCGTTAAGTGCTTCTTCCCGCCACAGTGAGACATCGTGTACTACGGAGCCACATTTCATCCGCAGGTCCAGGATCGGTATGTGAGTGCGAGTCATTCTAGGCACTTCAACCTGGAAAATGACAAAAAGGTCGTGAAGGAGGACAGAGGGCCTCCCTTGCAGCTCTTTTAGCCTCCTCACTTATGGCTAGCGGAGCGGTCCTAAATTTGATGGTgcctttatttacaaataaacatcGGCGGCCATATTTGTTTGAGATggttacattttttacaatatatgaGTGTCCCTCTTCAAATTCAGGGTCACTGCCGTTTTTTATGGACAGATAAACTGCATCACCATCCGTAAGGGCACATAAAGATGTGACTTTGTAGGTGtcaacaattattttgttttcatgtttaataaatgtcacAGCCTTTTGGCTACTGTGCACTTTAACACAGGTGATGTGCAGTGGTGGTGGGCGGCTGTACGGTGTTGCCAtcCTCAGAAGTATGCTGTCTGTTGTACAACTGAAAGAATTGACAGTGATGTGTATCCAGTCAGAAGCGAGACATCCATCACCAAGGCTCATGACGTCAGATGGAAACCTTTATCGA
>TCONS_00035620
GACTATCTTTGGCGCGTCTGCTAAATAGGTTAATAACCCTCTGATGCTGAGTGAGCTTCTCTTTCATTATGACCCGGGGCGGACTTACCAAAGACAGCACCAGGACATTTCACGTTGACCTAATGGTCAATCTGGAGTGCCACCGTGAATCTGGACCAATCGCCCACCACCAAGCGTAAAAGGCAGTCCATTGAGTCCTGAGTGTCTTCTGGATGGACCTGATTGGGGTCAGCAGATCCTCCACTGTGAACATCTGGAGGGCCCTGATCCGCATCAGCAGATCCTCCACTGGGAACATATGGAGGAACCTGATCCACACTGGCAGATCCTCCACTAGGAACGTCTGGAGGGACCTGATCCACACCAGCAGATCCTCCACAAGGTACGTCAGGAGGGACCTGTTCCACACCAGCAGATCCTCCACAAGGTACATCTGGAGGGACCTGTTTCACACTGGCAGGTTCCACGTGGAGGACGCTTCCACAGATGTGCctgagttttaattgaagtggGAGCTGGTTTGCCAGCTCCTCAATAGTGCCTGCATAGAAATGTACAGGCACTATGTACTCATCCATATGGCTATCCAGGAGGATGAGCTTGTCGTGCATCTCTGACACTCCAACGATCTCAAGAACTGCCTCCTGGATATCCCTATCAAtaagctgaaaaacaaaaaaaatttagaaaaGGTGACTGAGCTCAATGATGTCCCCGACATAGAGCTCGTTAAGTGCTTCTTCCCGCCACAGTGAGACATCGTGTACTACGGAGCCACATTTCATCCGCAGGTCCAGGATCGGTATGTGAGTGCGAGTCATTCTAGGCACTTCAACCTGGAAAATGACAAAAAGGTCGTGAAGGAGGACAGAGGGCCTCCCTTGCAGCTCTTTTAGCCTCCTCACTTATGGCTAGCGGAGCGGTCCTAAATTTGATGGTgcctttatttacaaataaacatcGGCGGCCATATTTGTTTGAGATggttacattttttacaatatatgaGTGTCCCTCTTCAAATTCAGGGTCACTGCCGTTTTTTATGGACAGATAAACTGCATCACCATCCGTAAGGGCACATAAAGATGTGACTTTGTAGGTGtcaacaattattttgttttcatgtttaataaatgtcacAGCCTTTTGGCTACTGTGCACTTTAACACAGGTGATGTGCAGTGGTGGTGGGCGGCTGTACGGTGTTGCCAtcctaaaaataagaaaaaaaggttACTTTGTATTAGTTGTAAATATTATGTAGAATAAATTCATTTCTTTTTAACTCAATTCATCAATTAAACATATCAATTAATCTAAA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021532 neural tube patterning biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003146 heart jogging biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000093707

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036475 False 547 lncRNA 0.44 2 24448007 24450177
TCONS_00036838 False 1330 lncRNA 0.48 5 24448007 24454929
TCONS_00035620 True 1324 lncRNA 0.46 4 24449637 24454929

Neighbor

gene id symbol gene type direction distance location
XLOC_018076 CR385053.3 coding downstream 4327 24435671 ~ 24443680 (-)
XLOC_018075 NA coding downstream 175544 24234926 ~ 24272463 (-)
XLOC_018074 NA coding downstream 259376 24187977 ~ 24188631 (-)
XLOC_018073 map3k7 coding downstream 264625 24149794 ~ 24183382 (-)
XLOC_018072 bach2b coding downstream 325126 23972948 ~ 24122881 (-)
XLOC_018078 NA coding upstream 274202 24729131 ~ 24732309 (-)
XLOC_018079 epha7 coding upstream 362189 24817118 ~ 24963092 (-)
XLOC_018080 NA coding upstream 852866 25307795 ~ 25311454 (-)
XLOC_018081 itsn2a coding upstream 904135 25359064 ~ 25436389 (-)
XLOC_018082 mrpl19 coding upstream 985585 25440514 ~ 25445246 (-)
XLOC_017928 CU539064.1 misc downstream 14394306 10053405 ~ 10053701 (-)
XLOC_018060 NA non-coding downstream 1251349 23194788 ~ 23196658 (-)
XLOC_018058 NA non-coding downstream 1288509 23157083 ~ 23159498 (-)
XLOC_018057 CU693368.1 non-coding downstream 1366211 23081660 ~ 23081796 (-)
XLOC_018088 BX322665.2 non-coding upstream 1145176 25600105 ~ 25605285 (-)
XLOC_018092 CR352243.2 non-coding upstream 1255862 25710791 ~ 25712415 (-)
XLOC_018102 BX470119.1 non-coding upstream 1664410 26119339 ~ 26119459 (-)
XLOC_018056 NA non-coding downstream 1364543 23081271 ~ 23083464 (-)

Expression


Co-expression Network