RNA id: TCONS_00035620


Basic Information

Item Value
RNA id TCONS_00035620
length 1324
lncRNA type antisense
GC content 0.46
exon number 4
gene id XLOC_018077
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 24448007 ~ 24454929 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTATCTTTGGCGCGTCTGCTAAATAGGTTAATAACCCTCTGATGCTGAGTGAGCTTCTCTTTCATTATGACCCGGGGCGGACTTACCAAAGACAGCACCAGGACATTTCACGTTGACCTAATGGTCAATCTGGAGTGCCACCGTGAATCTGGACCAATCGCCCACCACCAAGCGTAAAAGGCAGTCCATTGAGTCCTGAGTGTCTTCTGGATGGACCTGATTGGGGTCAGCAGATCCTCCACTGTGAACATCTGGAGGGCCCTGATCCGCATCAGCAGATCCTCCACTGGGAACATATGGAGGAACCTGATCCACACTGGCAGATCCTCCACTAGGAACGTCTGGAGGGACCTGATCCACACCAGCAGATCCTCCACAAGGTACGTCAGGAGGGACCTGTTCCACACCAGCAGATCCTCCACAAGGTACATCTGGAGGGACCTGTTTCACACTGGCAGGTTCCACGTGGAGGACGCTTCCACAGATGTGCctgagttttaattgaagtggGAGCTGGTTTGCCAGCTCCTCAATAGTGCCTGCATAGAAATGTACAGGCACTATGTACTCATCCATATGGCTATCCAGGAGGATGAGCTTGTCGTGCATCTCTGACACTCCAACGATCTCAAGAACTGCCTCCTGGATATCCCTATCAAtaagctgaaaaacaaaaaaaatttagaaaaGGTGACTGAGCTCAATGATGTCCCCGACATAGAGCTCGTTAAGTGCTTCTTCCCGCCACAGTGAGACATCGTGTACTACGGAGCCACATTTCATCCGCAGGTCCAGGATCGGTATGTGAGTGCGAGTCATTCTAGGCACTTCAACCTGGAAAATGACAAAAAGGTCGTGAAGGAGGACAGAGGGCCTCCCTTGCAGCTCTTTTAGCCTCCTCACTTATGGCTAGCGGAGCGGTCCTAAATTTGATGGTgcctttatttacaaataaacatcGGCGGCCATATTTGTTTGAGATggttacattttttacaatatatgaGTGTCCCTCTTCAAATTCAGGGTCACTGCCGTTTTTTATGGACAGATAAACTGCATCACCATCCGTAAGGGCACATAAAGATGTGACTTTGTAGGTGtcaacaattattttgttttcatgtttaataaatgtcacAGCCTTTTGGCTACTGTGCACTTTAACACAGGTGATGTGCAGTGGTGGTGGGCGGCTGTACGGTGTTGCCAtcctaaaaataagaaaaaaaggttACTTTGTATTAGTTGTAAATATTATGTAGAATAAATTCATTTCTTTTTAACTCAATTCATCAATTAAACATATCAATTAATCTAAA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021532 neural tube patterning biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003146 heart jogging biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000134706

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036837 lncRNA downstream 177174 24234926 ~ 24272463 (-) True XLOC_018075
TCONS_00036474 lncRNA downstream 261006 24187977 ~ 24188631 (-) True XLOC_018074
TCONS_00035617 lncRNA downstream 267649 24171668 ~ 24181988 (-) False XLOC_018073
TCONS_00035615 lncRNA downstream 289873 24152678 ~ 24159764 (-) False XLOC_018073
TCONS_00035610 lncRNA downstream 326880 24064689 ~ 24122757 (-) False XLOC_018072
TCONS_00036476 lncRNA upstream 274202 24729131 ~ 24732309 (-) True XLOC_018078
TCONS_00036839 lncRNA upstream 852866 25307795 ~ 25311454 (-) True XLOC_018080
TCONS_00036840 lncRNA upstream 946157 25401086 ~ 25412181 (-) True XLOC_018081
TCONS_00035638 lncRNA upstream 1093496 25548425 ~ 25551676 (-) False XLOC_018087
TCONS_00035640 lncRNA upstream 1145176 25600105 ~ 25605285 (-) True XLOC_018088
TCONS_00035619 mRNA downstream 5957 24435671 ~ 24443680 (-) True XLOC_018076
TCONS_00035618 mRNA downstream 266255 24181798 ~ 24183382 (-) True XLOC_018073
TCONS_00035613 mRNA downstream 266304 24151004 ~ 24183333 (-) False XLOC_018073
TCONS_00035612 mRNA downstream 266948 24149794 ~ 24182689 (-) False XLOC_018073
TCONS_00035621 mRNA upstream 362189 24817118 ~ 24963092 (-) False XLOC_018079
TCONS_00035622 mRNA upstream 362907 24817836 ~ 24963038 (-) True XLOC_018079
TCONS_00035623 mRNA upstream 904135 25359064 ~ 25436389 (-) False XLOC_018081
TCONS_00035624 mRNA upstream 904138 25359067 ~ 25369767 (-) False XLOC_018081
TCONS_00035625 mRNA upstream 904179 25359108 ~ 25412181 (-) False XLOC_018081
TCONS_00035616 other downstream 277497 24152799 ~ 24172140 (-) False XLOC_018073
TCONS_00035611 other downstream 326880 24083139 ~ 24122757 (-) True XLOC_018072
TCONS_00035595 other downstream 1023983 23423846 ~ 23425654 (-) True XLOC_018063
TCONS_00035593 other downstream 1200998 23245639 ~ 23248639 (-) True XLOC_018062
TCONS_00035590 other downstream 1223261 23223900 ~ 23226376 (-) True XLOC_018061
TCONS_00035626 other upstream 913581 25368510 ~ 25369880 (-) False XLOC_018081
TCONS_00035635 other upstream 1082651 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035636 other upstream 1083426 25538355 ~ 25540754 (-) True XLOC_018086
TCONS_00035639 other upstream 1094496 25549425 ~ 25550816 (-) True XLOC_018087
TCONS_00035648 other upstream 1187751 25642680 ~ 25644837 (-) True XLOC_018090

Expression Profile

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