RNA id: TCONS_00035640


Basic Information

Item Value
RNA id TCONS_00035640
length 812
lncRNA type lincRNA
GC content 0.38
exon number 9
gene id XLOC_018088
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25600105 ~ 25605285 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tattgtaggtgtgttggtgtaaaaagtgatgctgactgaactcatGCAGTTGTGTTGGACCCTCTGTACCTTATACAGGAGATGATGGTAAACTTtgaagtttaagagGTTCTGTaattttggttataagtacaaggtgtgttggtgtaaaaattgatgctgactgaactcgggcagttgtgctggaccatCTGTACTTAGTACAGGGGATGACAGTAAACTTTCAAGCTTAAGAGcCACCTGATGATGAGAGAGACAATTTCAATaagaagagTCCACAGTCACAATAACAAGATCATTGGGCTGTCCCCTAATTGTGGTGAGCTACATGTTTAGTCTCTTATGTGCTAAACATTATGTAGCCTAAGGAAGCAGCCCTGACTCTGGAGTTTATATGAAgGAGCATGCTGAGTAACTATCCAGAATGTAGGTCCAAAGCAGAAAAAAGAGCACCAAGCAGAAACATACCATCTAAACTCCTTCGATTCCTGTCAGACCAGAAAGACTTTCAGAATCCTTGGAAGATTTAAAGccatTGAAGTATCAGTATTGGAGCGGAAGAAGACCCAGTTGTATCGTCTGTTTCCTGCCATCTTGCAGTTTAACCTGGTTTCTTAATGTAAAGTACTTGTACTTTGCCCACTTGTCCTCAATTATCTTAAagctaacatttaaaactaatttgctaTGAGATTATTTGCCAAGACCTCTCACTGTGTGATTCACATGTCAATATGTATTATTGTATGTATAACTAGCTATTtggaattcaaatgatttgtattcattaaagaatctgttttaattgcaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000145671

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035638 lncRNA downstream 48429 25548425 ~ 25551676 (-) False XLOC_018087
TCONS_00036840 lncRNA downstream 187924 25401086 ~ 25412181 (-) True XLOC_018081
TCONS_00036839 lncRNA downstream 288651 25307795 ~ 25311454 (-) True XLOC_018080
TCONS_00036476 lncRNA downstream 867796 24729131 ~ 24732309 (-) True XLOC_018078
TCONS_00036838 lncRNA downstream 1145176 24448007 ~ 24454929 (-) False XLOC_018077
TCONS_00036841 lncRNA upstream 60764 25666049 ~ 25669922 (-) False XLOC_018091
TCONS_00035653 lncRNA upstream 105506 25710791 ~ 25712415 (-) True XLOC_018092
TCONS_00036842 lncRNA upstream 457260 26062545 ~ 26070949 (-) True XLOC_018101
TCONS_00036843 lncRNA upstream 840618 26445903 ~ 26458381 (-) True XLOC_018107
TCONS_00036844 lncRNA upstream 874777 26480062 ~ 26523214 (-) False XLOC_018108
TCONS_00035637 mRNA downstream 48429 25548425 ~ 25551676 (-) False XLOC_018087
TCONS_00035634 mRNA downstream 57922 25534669 ~ 25542183 (-) False XLOC_018086
TCONS_00035633 mRNA downstream 66366 25525802 ~ 25533739 (-) True XLOC_018085
TCONS_00035631 mRNA downstream 77194 25515259 ~ 25522911 (-) False XLOC_018084
TCONS_00035632 mRNA downstream 81617 25515260 ~ 25518488 (-) True XLOC_018084
TCONS_00035641 mRNA upstream 12829 25618114 ~ 25626198 (-) False XLOC_018089
TCONS_00035642 mRNA upstream 12829 25618114 ~ 25626428 (-) False XLOC_018089
TCONS_00035643 mRNA upstream 12829 25618114 ~ 25626693 (-) False XLOC_018089
TCONS_00035644 mRNA upstream 12829 25618114 ~ 25631256 (-) True XLOC_018089
TCONS_00035645 mRNA upstream 34185 25639470 ~ 25645150 (-) False XLOC_018090
TCONS_00035639 other downstream 49289 25549425 ~ 25550816 (-) True XLOC_018087
TCONS_00035636 other downstream 59351 25538355 ~ 25540754 (-) True XLOC_018086
TCONS_00035635 other downstream 61688 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035626 other downstream 230225 25368510 ~ 25369880 (-) False XLOC_018081
TCONS_00035616 other downstream 1427965 24152799 ~ 24172140 (-) False XLOC_018073
TCONS_00035648 other upstream 37395 25642680 ~ 25644837 (-) True XLOC_018090
TCONS_00035651 other upstream 60764 25666049 ~ 25709349 (-) False XLOC_018091
TCONS_00035674 other upstream 514054 26119339 ~ 26119459 (-) True XLOC_018102
TCONS_00035675 other upstream 589441 26194726 ~ 26194841 (-) True XLOC_018103
TCONS_00035681 other upstream 785510 26390795 ~ 26391957 (-) True XLOC_018105

Expression Profile

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