XLOC_018063 (zar1)


Basic Information

Item Value
gene id XLOC_018063
gene name zar1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23423814 ~ 23426339 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035594
GGCTAAGCGAAAAATGGCTACATATGGAAACGAGACAGTCGATAACTATCTTTACTCCTCTTACAACCCTTATTACTACAAATACCCCAAATTCAAGGGCTGGAGACAGAAAGCTTACTTCACCAACTACGGTGAGGGCGAGACCTACTTTGATAATCACCACAGGGCGCAGCTGAAGTCCATCTTGTCTCAGATCAACCCAAATCTCACCCCGCGTCTGAGGAAGGCCAACACCAAAGACGTCGGGGTTCAGGTCAACCCGAAGACCGACGCGTCTATCCAGTGCTCTCTGGGGCCGCGGACGCTTCTGGCACGCAAACGCGATGCCCTGCGCCGGCGGCGGCAGGAGGTCCAGACCCCTGGGAGTCCCGTCAGCAGCGGTGGTGTCCGGTTCCCGCGCACCCAGGCCGTTTACTCCCCAGTAGAATCCCGGAGACTAGTGTCCCTCTTCAGAGAGGAGGGTGAAGAAGAGGAGGACACGGATCTCGAGGTCACAGAGACGGTTGACAGCGCAGAGAAGCTGGAAAGCGCCGAGAAAAACGTGCGCAAACAGGGTAAGAAAAGCGCGAAGCAACCGCTTAGTCCagagaaaaatataaacaagcaGACTGAAACAAATGAGGAGAACACAAACGAGCCAGTGAAAACCGAACAAGACGATCTGAAGTCCAAGGCTCGTGTGAGATTTCAGTTTTTGGAGCAGAAGTATGGATTCTATCATTGCAAAGACTGCAACCTACGGTGGGAAAGTGCTTATGTGTGGTGTGTCCAAGGAACAAACAAGgtttatttcAAGCAGTTCTGCAGAACATGCCAGAAATCATTCAACCCATACCGGGTTGAGGACATAGCATGTCAGACTTGCAAGAAAGCTCGCTGCACATGTTCTGTCAAGTCGCGTCACGTGGACCCCAAAAGACCCCACCGGCAGGATCTGTGCGGCCGCTGTAAAGGCAAGCGTCTGTCCTGCGACAGCACGTTCAGCTTCAAGTACATCATCTAGCAGCTCTGTCCATTGTTGTCATCAGCTGGATTGTCCACCTCAGTCTCTGCACCTCTGCTGCTCGTCGACCGCAGTGGGGGAGGCAGGCCCATCGGCCACTACagtctcatttgtttttgttttgctttgattaCGAATTGCAGTACTTGTAGGTGTGATTTCTGAACAATAAAAATGGAAGTTACTAGCA
>TCONS_00035595
TTTCAGGTGACATTAATTTATTCTCATAGCATATATATGAAACTTAATCGACGTGTGTTTTTAACATAACTTGCTTTAGAATTGCAGTTGAAGTGTTTTGGCACTTCCAGTATTATATTATCTTTTCAATCCAGTTTTTGGAGCAGAAGTATGGATTCTATCATTGCAAAGACTGCAACCTACGGTGGGAAAGTGCTTATGTGTGGTGTGTCCAAGGAACAAACAAGgtttatttcAAGCAGTTCTGCAGAACATGCCAGAAATCATTCAACCCATACCGGGTTGAGGACATAGCATGTCAGACTTGCAAGAAAGCTCGCTGCACATGTTCTGTCAAGTCGCGTCACGTGGACCCCAAAAGACCCCACCGGCAGGATCTGTGCGGCCGCTGTAAAGGCAAGCGTCTGTCCTGCGACAGCACGTTCAGCTTCAAGTACATCATCTAGCAGCTCTGTCCATTGTTGTCATCAGCTGGATTGTCCACCTCAGTCTCTGCACCTCTGCTGCTCGTCGACCGCAGTGGGGGAGGCAGGCCCATCGGCCACTACagtctcatttgtttttgttttgctttgattaCGAATTGCAGTACTTGTAGGTGTGA

Function

symbol description
zar1 Enables mRNA binding activity involved in posttranscriptional gene silencing. Acts upstream of with a negative effect on translation. Acts upstream of or within negative regulation of translation and positive regulation of oogenesis. Part of protein-containing complex. Is expressed in gonad; liver; oocyte stage I; and oocyte stage II. Orthologous to human ZAR1 (zygote arrest 1).

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:1905881 positive regulation of oogenesis biological_process
GO:0017148 negative regulation of translation biological_process
GO:0032991 protein-containing complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:1903231 mRNA binding involved in posttranscriptional gene silencing molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030818-1 Enables mRNA binding activity involved in posttranscriptional gene silencing. Acts upstream of with a negative effect on translation. Acts upstream of or within negative regulation of translation and positive regulation of oogenesis. Part of protein-containing complex. Is expressed in gonad; liver; oocyte stage I; and oocyte stage II. Orthologous to human ZAR1 (zygote arrest 1).

Ensembl:

ensembl_id ENSDARG00000019706

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035594 False 1193 mRNA 0.52 4 23423814 23426339
TCONS_00035595 True 604 processed_transcript 0.45 3 23423846 23425654

Neighbor

gene id symbol gene type direction distance location
XLOC_018062 ociad1 coding downstream 168938 23245620 ~ 23254876 (-)
XLOC_018061 dcun1d4 coding downstream 197361 23203946 ~ 23226453 (-)
XLOC_018060 NA coding downstream 227156 23194788 ~ 23196658 (-)
XLOC_018059 spata18 coding downstream 252384 23160512 ~ 23171430 (-)
XLOC_018058 NA coding downstream 264316 23157083 ~ 23159498 (-)
XLOC_018064 slc10a4 coding upstream 5146 23431485 ~ 23440955 (-)
XLOC_018065 slain2 coding upstream 19904 23446243 ~ 23472319 (-)
XLOC_018066 anapc4 coding upstream 49042 23475381 ~ 23494712 (-)
XLOC_018067 cbr4 coding upstream 224493 23650832 ~ 23657304 (-)
XLOC_018068 si:dkey-15j16.3 coding upstream 412475 23838814 ~ 23842631 (-)
XLOC_017928 CU539064.1 misc downstream 13370113 10053405 ~ 10053701 (-)
XLOC_018056 NA non-coding downstream 340350 23081271 ~ 23083464 (-)
XLOC_018057 CU693368.1 non-coding downstream 342018 23081660 ~ 23081796 (-)
XLOC_018054 BX511028.1 non-coding downstream 513502 22910198 ~ 22910312 (-)
XLOC_018074 NA non-coding upstream 761638 24187977 ~ 24188631 (-)
XLOC_018075 NA non-coding upstream 808587 24234926 ~ 24272463 (-)
XLOC_018077 NA non-coding upstream 1021668 24448007 ~ 24454929 (-)
XLOC_018078 NA non-coding upstream 1302792 24729131 ~ 24732309 (-)
XLOC_018080 NA non-coding upstream 1881456 25307795 ~ 25311454 (-)

Expression


Co-expression Network