XLOC_018064 (slc10a4)


Basic Information

Item Value
gene id XLOC_018064
gene name slc10a4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23431485 ~ 23440955 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035596
GTGGAGCGCGCGCCTTGCCTTTCTCCACAGTTCTGGGAGGGGACACCTGCGGGGACCAAGGATCCTTTGGAGAGCTCCAGTCCCCAGGAGAGTCGATGGAGACCTACAGCACCTACAGGAGGCTTCTGAGCTTCACGGAAGGTCTCGACAGTTTCCCGGAGAGTCCACTTATGGCGGAGTTACGCGCCACACAAGAGCCGCTCTCTCTGGTGCCCAGGAGCGATGTGGCTCCAGCAGGGCTCCTGGCGGCTCAGTTCTCGTCCTCTGAAGCACCCACTCACCGGATCGTTGCTTTCTGGGATTCACCTTTGAGTCACTGGATTAACGTGTTTGTTGGCATAGTCCTGTGCTTCACCATGCTCGGGCTGGGCTGCACGGTGGAGCTCAGTCAGCTGGGCGAGCACATCCGCAAGCCCATCGGAGTGCTGCTGGCGGCGGTGTGCCAGTTTGTGCTGATGCCCCTCATCGCCTTCCTTCTGGCTCTTGCCTTCTCGCTCAACGATGTGGCCGCAATGGCCGTGCTGTTGTGCGGCTGCTGCCCCGGAGGAAACCTCTCCAACATAATGACTCTGCTGGTCAACGGAGACATGAACCTCAGCATCATCATGACCATCTCCTCCACTCTCCTGGCCCTTGTGCTCATGCCGCTGTGTCTGTGGATGTATAGTCGCGCATGGATCAACACACCAGTGGTGGACCTTCTGCCCTTCGGCCCCATCATTCTGACCCTGTGCAGCACCCTCATCCCCATCGGCCTTGGCGTCTGGCTGAGACAGCGCTACATTCACGTGGCAGAAGTCATCATCAAGGTGTCTCTGTGGTCTCTCCTGGTGACTCTGCTGATGCTCTTCATCATGACTGGCACTATGCTGGGCCCGGAGCTGCTGGCCACCATCCCTGCCTCTGTGTACCTGGTGGCTGTGCTCATGCCAATGGCTGGCTACACTGCAGGATACGGCCTTGCCACGCTCTTCGACCTCCCCCCTAACAGCCGCAGGACTGTCTCTTTAGAGACCGGATGCCAGAACATTCAGCTCTGCACTGCTATCCTGAAATTGGCGTTCCCCCCGCAGTTGATGGGTGGCATGTACATGTTTCCTTTGCTGTACGCTCTCTTCCAGGCCGCAGAGGCTGGCATCTTCATCCTGGTTTACCGCATGTACAGGAAAGAGGTTTTACACAAACAGGACCTCATGGAAGACGATGATGACGACACGAATGTATCCTACAAGAGAATGAAGGAAGAAGATGTGCCGTTTGATTCTACATATGGCGCGGTAATAGTGAGCGATCCGAATGTCATTGTGCTCGAGTCACAGGATGGTGCTGGAAGTCCTACGCCTGTGTAAAAACACACACGTACAAAAAAACTACTGGACTACACTGGACCTGTGTAATTGCATAAGGATTGATCCATTTCATTAGTTTTCTAACTAATCACTCGCAGAGTTTTAATGATAACGTGCCAAAAATGATTGCAAGACTGTGAAAATGAAAACTAATATCTTGACATCACTCAGAGGTGATAGGAAAGTTATTCAAGCCAATGTTTTAATGCTTTAAATCTTCATATAAAC
>TCONS_00035597
AATTTCAACAAATGGTTAGGCCTATTACCATAAAGAAAACCATCATCATGACCATCTCCTCCACTCTCCTGGCCCTTGTGCTCATGCCGCTGTGTCTGTGGATGTATAGTCGCGCATGGATCAACACACCAGTGGTGGACCTTCTGCCCTTCGGCCCCATCATTCTGACCCTGTGCAGCACCCTCATCCCCATCGGCCTTGGCGTCTGGCTGAGACAGCGCTACATTCACGTGGCAGAAGTCATCATCAAGGTGTCTCTGTGGTCTCTCCTGGTGACTCTGCTGATGCTCTTCATCATGACTGGCACTATGCTGGGCCCGGAGCTGCTGGCCACCATCCCTGCCTCTGTGTACCTGGTGGCTGTGCTCATGCCAATGGCTGGCTACACTGCAGGATACGGCCTTGCCACGCTCTTCGACCTCCCCCCTAACAGCCGCAGGACTGTCTCTTTAGAGACCGGATGCCAGAACATTCAGCTCTGCACTGCTATCCTGAAATTGGCGTTCCCCCCGCAGTTGATGGGTGGCATGTACATGTTTCCTTTGCTGTACGCTCTCTTCCAGGCCGCAGAGGCTGGCATCTTCATCCTGGTTTACCGCATGTACAGGAAA

Function

symbol description
slc10a4 Predicted to enable bile acid:sodium symporter activity. Predicted to be involved in bile acid and bile salt transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood; nervous system; and ventral mesoderm. Orthologous to human SLC10A4 (solute carrier family 10 member 4).

GO:

id name namespace
GO:0015721 bile acid and bile salt transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008508 bile acid molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-041014-249 Predicted to enable bile acid:sodium symporter activity. Predicted to be involved in bile acid and bile salt transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood; nervous system; and ventral mesoderm. Orthologous to human SLC10A4 (solute carrier family 10 member 4).

Ensembl:

ensembl_id ENSDARG00000009131

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035596 False 1577 mRNA 0.53 3 23431485 23439011
TCONS_00035597 True 611 mRNA 0.55 3 23431893 23440955

Neighbor

gene id symbol gene type direction distance location
XLOC_018063 zar1 coding downstream 5146 23423814 ~ 23426339 (-)
XLOC_018062 ociad1 coding downstream 176609 23245620 ~ 23254876 (-)
XLOC_018061 dcun1d4 coding downstream 205032 23203946 ~ 23226453 (-)
XLOC_018060 NA coding downstream 234827 23194788 ~ 23196658 (-)
XLOC_018059 spata18 coding downstream 260055 23160512 ~ 23171430 (-)
XLOC_018065 slain2 coding upstream 5288 23446243 ~ 23472319 (-)
XLOC_018066 anapc4 coding upstream 34426 23475381 ~ 23494712 (-)
XLOC_018067 cbr4 coding upstream 209877 23650832 ~ 23657304 (-)
XLOC_018068 si:dkey-15j16.3 coding upstream 397859 23838814 ~ 23842631 (-)
XLOC_018069 si:dkey-15j16.6 coding upstream 406425 23847380 ~ 23852174 (-)
XLOC_017928 CU539064.1 misc downstream 13377784 10053405 ~ 10053701 (-)
XLOC_018058 NA non-coding downstream 271987 23157083 ~ 23159498 (-)
XLOC_018056 NA non-coding downstream 348021 23081271 ~ 23083464 (-)
XLOC_018057 CU693368.1 non-coding downstream 349689 23081660 ~ 23081796 (-)
XLOC_018054 BX511028.1 non-coding downstream 521173 22910198 ~ 22910312 (-)
XLOC_018074 NA non-coding upstream 747022 24187977 ~ 24188631 (-)
XLOC_018075 NA non-coding upstream 793971 24234926 ~ 24272463 (-)
XLOC_018077 NA non-coding upstream 1007052 24448007 ~ 24454929 (-)
XLOC_018078 NA non-coding upstream 1288176 24729131 ~ 24732309 (-)
XLOC_018080 NA non-coding upstream 1866840 25307795 ~ 25311454 (-)

Expression


Co-expression Network