RNA id: TCONS_00035596


Basic Information

Item Value
RNA id TCONS_00035596
length 1577
RNA type mRNA
GC content 0.53
exon number 3
gene id XLOC_018064
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23431485 ~ 23440955 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGAGCGCGCGCCTTGCCTTTCTCCACAGTTCTGGGAGGGGACACCTGCGGGGACCAAGGATCCTTTGGAGAGCTCCAGTCCCCAGGAGAGTCGATGGAGACCTACAGCACCTACAGGAGGCTTCTGAGCTTCACGGAAGGTCTCGACAGTTTCCCGGAGAGTCCACTTATGGCGGAGTTACGCGCCACACAAGAGCCGCTCTCTCTGGTGCCCAGGAGCGATGTGGCTCCAGCAGGGCTCCTGGCGGCTCAGTTCTCGTCCTCTGAAGCACCCACTCACCGGATCGTTGCTTTCTGGGATTCACCTTTGAGTCACTGGATTAACGTGTTTGTTGGCATAGTCCTGTGCTTCACCATGCTCGGGCTGGGCTGCACGGTGGAGCTCAGTCAGCTGGGCGAGCACATCCGCAAGCCCATCGGAGTGCTGCTGGCGGCGGTGTGCCAGTTTGTGCTGATGCCCCTCATCGCCTTCCTTCTGGCTCTTGCCTTCTCGCTCAACGATGTGGCCGCAATGGCCGTGCTGTTGTGCGGCTGCTGCCCCGGAGGAAACCTCTCCAACATAATGACTCTGCTGGTCAACGGAGACATGAACCTCAGCATCATCATGACCATCTCCTCCACTCTCCTGGCCCTTGTGCTCATGCCGCTGTGTCTGTGGATGTATAGTCGCGCATGGATCAACACACCAGTGGTGGACCTTCTGCCCTTCGGCCCCATCATTCTGACCCTGTGCAGCACCCTCATCCCCATCGGCCTTGGCGTCTGGCTGAGACAGCGCTACATTCACGTGGCAGAAGTCATCATCAAGGTGTCTCTGTGGTCTCTCCTGGTGACTCTGCTGATGCTCTTCATCATGACTGGCACTATGCTGGGCCCGGAGCTGCTGGCCACCATCCCTGCCTCTGTGTACCTGGTGGCTGTGCTCATGCCAATGGCTGGCTACACTGCAGGATACGGCCTTGCCACGCTCTTCGACCTCCCCCCTAACAGCCGCAGGACTGTCTCTTTAGAGACCGGATGCCAGAACATTCAGCTCTGCACTGCTATCCTGAAATTGGCGTTCCCCCCGCAGTTGATGGGTGGCATGTACATGTTTCCTTTGCTGTACGCTCTCTTCCAGGCCGCAGAGGCTGGCATCTTCATCCTGGTTTACCGCATGTACAGGAAAGAGGTTTTACACAAACAGGACCTCATGGAAGACGATGATGACGACACGAATGTATCCTACAAGAGAATGAAGGAAGAAGATGTGCCGTTTGATTCTACATATGGCGCGGTAATAGTGAGCGATCCGAATGTCATTGTGCTCGAGTCACAGGATGGTGCTGGAAGTCCTACGCCTGTGTAAAAACACACACGTACAAAAAAACTACTGGACTACACTGGACCTGTGTAATTGCATAAGGATTGATCCATTTCATTAGTTTTCTAACTAATCACTCGCAGAGTTTTAATGATAACGTGCCAAAAATGATTGCAAGACTGTGAAAATGAAAACTAATATCTTGACATCACTCAGAGGTGATAGGAAAGTTATTCAAGCCAATGTTTTAATGCTTTAAATCTTCATATAAAC

Function

GO:

id name namespace
GO:0015721 bile acid and bile salt transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008508 bile acid molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-041014-249 Predicted to enable bile acid:sodium symporter activity. Predicted to be involved in bile acid and bile salt transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood; nervous system; and ventral mesoderm. Orthologous to human SLC10A4 (solute carrier family 10 member 4).

Ensembl:

ensembl_id ENSDART00000022887

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036473 lncRNA downstream 234827 23194788 ~ 23196658 (-) True XLOC_018060
TCONS_00036472 lncRNA downstream 260126 23169183 ~ 23171359 (-) True XLOC_018059
TCONS_00036835 lncRNA downstream 262517 23160676 ~ 23168968 (-) False XLOC_018059
TCONS_00035585 lncRNA downstream 267907 23160676 ~ 23163578 (-) False XLOC_018059
TCONS_00035600 lncRNA upstream 41442 23480453 ~ 23488144 (-) False XLOC_018066
TCONS_00036836 lncRNA upstream 469583 23908594 ~ 23946098 (-) True XLOC_018071
TCONS_00035610 lncRNA upstream 625678 24064689 ~ 24122757 (-) False XLOC_018072
TCONS_00035615 lncRNA upstream 713667 24152678 ~ 24159764 (-) False XLOC_018073
TCONS_00035617 lncRNA upstream 732657 24171668 ~ 24181988 (-) False XLOC_018073
TCONS_00035594 mRNA downstream 5146 23423814 ~ 23426339 (-) False XLOC_018063
TCONS_00035592 mRNA downstream 176609 23245620 ~ 23254876 (-) False XLOC_018062
TCONS_00035591 mRNA downstream 177855 23245620 ~ 23253630 (-) False XLOC_018062
TCONS_00035588 mRNA downstream 205032 23203946 ~ 23226453 (-) False XLOC_018061
TCONS_00035589 mRNA downstream 211521 23206134 ~ 23219964 (-) False XLOC_018061
TCONS_00035598 mRNA upstream 7232 23446243 ~ 23472319 (-) True XLOC_018065
TCONS_00035599 mRNA upstream 36370 23475381 ~ 23494695 (-) False XLOC_018066
TCONS_00035601 mRNA upstream 49506 23488517 ~ 23494712 (-) True XLOC_018066
TCONS_00035602 mRNA upstream 211821 23650832 ~ 23657304 (-) False XLOC_018067
TCONS_00035603 mRNA upstream 212190 23651201 ~ 23656516 (-) True XLOC_018067
TCONS_00035595 other downstream 5831 23423846 ~ 23425654 (-) True XLOC_018063
TCONS_00035593 other downstream 182846 23245639 ~ 23248639 (-) True XLOC_018062
TCONS_00035590 other downstream 205109 23223900 ~ 23226376 (-) True XLOC_018061
TCONS_00035586 other downstream 268228 23161279 ~ 23163257 (-) False XLOC_018059
TCONS_00035582 other downstream 349295 23082069 ~ 23082190 (-) False XLOC_018056
TCONS_00035611 other upstream 644128 24083139 ~ 24122757 (-) True XLOC_018072
TCONS_00035616 other upstream 713788 24152799 ~ 24172140 (-) False XLOC_018073
TCONS_00035626 other upstream 1929499 25368510 ~ 25369880 (-) False XLOC_018081
TCONS_00035635 other upstream 2098569 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035636 other upstream 2099344 25538355 ~ 25540754 (-) True XLOC_018086

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_03259833_03264532.mRNA True 2938 mRNA 0.45 3 CI01000325 3258892 ~ 3265233 (-)