RNA id: TCONS_00036836


Basic Information

Item Value
RNA id TCONS_00036836
length 6639
lncRNA type sense_over
GC content 0.51
exon number 43
gene id XLOC_018071
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23877299 ~ 23946296 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTAGAATGGAAAACCTGGAGTTGAGCCTGACATCTCTGGGTGCAATATCAAGACACATCGATAAAAGTCAGAACGAACTCAGCAAATATCTCGCAAAACAGATATGGAGTCAGCAGGACAGGCAGTGCATTTTGGAATGTCTTGCACAGCTCTTGTTGGAAAAGGAATACACTCTCCTCATCGCTCGTCACTTACGACCACTGATCCTGGACCTGTTGGAGAGAAATGCTGAAAGGATCAAAGCAGACATCAGGTTGAATCACGACCTCCATGAGCGCCTGTGTGTGGCTCTAAGCAAACTTCTCAACATCAGTCCAGATGCTCAAGTGTTTGCAGCGAGGTATTTCAGCAGCTCTCCTCCAGTATTTCAGAGGCTCTTCTTTACCAGTGAAGAGGCTGCATCCATCCAGTATGGACCCAGACGGATGAAACTACGGGACCTGATGGGGGCCACTCTCCGCTTCCTCCAAAGCGATTGTGAGAAGTTTCGTGTCCTGTGGGACTGGAGTGcctgtgtttcacagcttctcacTAGCGACGTCATGGTTAGAAGCTATACTGCCCAGTGCCTTGCCCTGGTGTCCCACATGACAGATAACcagaaaacaatatttttgcGGAAGGTTCTTTCCAGTGAAGAGATTCTGCATCTGAAAATGAAGTCACTTGAGGAGGTACAGCAGCTGGAAGTAGAAAAGGCGCTAGTTTTGGCCAATCAGGGCTCAGCAATATGGCGGAAAGAGAGGGTAAAGAAGGTCACCTCTGGTCAGGTGGTGACAGAAGACCTAACAAAGAGTGTTACTGTGAAATGCTTGAGGAATTTGGTGTTGGTGGATTCAACCTGTCAAAATCTACGGCGACTTGCTATGGCAGTTGCATCCCAGAAGCCCATTCTTTTAGAAGGGCCTATTGGATGTGGGAAAACTGCTCTGGTTGAATACCTAGCTGCTGTCACTGGGCACGTTAAAGCCCCTGACATCCTTAAAGTTCAGCTTGGAGATCAGACCGACAGTAAGATGTTGCTGGGTATGTACCGCTGCACAGATGTTCCTGGAAAGTTTGTGTGGCAGCCAGGTTCTTTGACCCAGGCCGTCTCAAAAGGTTACTGGATTCTGCTGGAGGACATTGATCATGCTCCTTTGGATGTGATATCAGTTCTCCTCCCTCTAATGGAGAACAAGAAATTAACAATTCCAGGACGTGAAGACTGTATTCAGATGTCCCCAGCTTTTCAGTTTTTTGCAACCCGAAGTGGAGGAGCCTGGCATCGACCACAGAATACACATGCTGCACTTTTGGACAAATACTGGAGTAAATTGCAGATCAGTAACATGAGCAGAGAGGAACTTACACAGGTCCTAATAAAGAGGTTCCCTAACTTGGCAGTGGTGGTGGATCGTCTTTTGGACATCTACTGCCAGCTAACGGGAAATAGACATCAGATCAACTCTAGTTCTCAGGGTCCAAGTGCAGCCCAAAGCATATCAGATGACCACATCACATCACTGGAGGGCAGAGGTCTCTCACTAAGGCTCTGGACTGCTTTACTGCCATGCTTTCCAAATCTGAGAGCAGACTCAAGATGGCAGAGATCATCGGCAGCAGGCTTAACATATCCAAAGAGAAGAGACAGACAAACATTCGCCGCCACTCGTCCATCCTCTGTCCTCCTGGAGCAGCTCTCAGTGTGTGTGACTAAAGGAGAGCCTATCCTGTTGGTTGGGGAGACAGGCACAGGAAAGACCTCCACCGTCCAGTACCTGGCAGGACTGACAGGACACCGACTCAGAGTGGTCAACATGAACCAGCAGAGTGACACGGCTGACCTACTGGGAGGGTATAAACCAGTGGATCATAAGCTCATCCTGTTGCCCCTCCGGGAAGCGTTTGAGGATCTTTTCTCTCAGACATACTCAAGAAAACAGAACCTGACCTTTCTGGGTCACGTCCAAACCTGCTTCAGAGGCAAACGCTGGCAGGACCTTCTGAAGCTCATGGACCATGTCTGCAAATCAGCTCTAACTAAGGAACTTCATGATAAACCCAATGCTGCCTTGCTGCAGGAGCAGTGGGAGGCTTTGGCTCTCAAACTCAGTCAGACGCAGGAACAGATCCGGGCCTGTGAATCTGCTATGGTCTTTGCGTTTGTGGAAGGAACATTGGCTCAGGCTGTGAAGAAAGGTGAATGGATCCTGCTGGATGAGATTAATCTGGCTGCTGCAGAGACGCTGGAGTGTCTGAGCGGGTTATTGGAGGGCAGTTCTGGGTCACTGGTGCTACTGGACAGAGGCGATACTGAGCCTCTTTTTCGTCACTCGGACTTTCGTCTGTTTGCCTGCATGAACCCAGCCACTGATGTAGGCAAGAGGAACCTGCCACTTGGCATTAGAAACAGATTCACAGAGTTGTATGTGGAGGAGCTGGAGAGTGAGAGCGATTTACGAATCTTGGTCTCGGACTACCTCAAAGGCCTTAACCTGTCCAGAGGAATCATCCATGGGATCATCAGTTTTTATTTGGCCGTTCGTAAGGAGGCTAACACTCGTCTAGTGGATGGTACAGGTCATAAGCCACACTATAGTTTGCGTACTTTATGCCGAGCTCTGAAGTTTGTGGCCTCTGATCCCTGCTACAACATCCAAAGATCCCTCTATGAGCCAATCCCTCAGCCGAAGGACCGCGTGTGTGTTCAGATAGACGAGTACTGGTTGAGTCAGGGCGATAAGGAGCCCGCTGTTGACCCCAGTTACATCCTCACACCCTCCGTCAAGCTCAACCTGAAAGATCTTGCACGGGTGGTGGCCGCCGGCATTCATCCAGTGCTCCTTCAGGGGGAAACGTCTGTTGGAAAGACCAGTCTGATAAAATGGCTTGCAGCTTCCACAGGAAACCAATGTGTGCGAATCAATAATCACGAGCACACAGATATTCAGGAGTACATCGGCTGCTACTCCTCCGATGAGCATGGCAAACTTGTCTTCAAAGAAGGCGTCCTGATCGATGCTATGCGGAAAGGTTACTGGATCATTTTGGATGAACTGAATCTTGCCCCCACTGATGTTCTTGAGGCTCTGAATAGATTACTGGATGACAACCGGGAGCTCTTCGTGGCCGAGACACAGGAAGTGGTCAAAGCCCATCCCAGATTCATGCTCTTTGCCACCCAGAACCCTCCTGGGCTCTATGGGGGCAGAAAGGTTCTGTCCCGAGCGTTCAGAAACCGTTTTGTGGAGCTGCATTTCAATGAGCTGCCCAGTTCAGAGCTGGAGAACATTCTCCATCAGCGCTGTAGTTTGCCTCCTTCCTACTGCTCCAAACTCATCAAGGTCATGCAGGACCTGCAGTCTTTACGTAGAGGGTCCAGTGTGTTTGCTGGGAAACATGGGTACATTACTCTGAGAGACCTGTTCCGCTGGGCTGAACGCTATAGGCTGGAGGAGCAGAGTGAATCCTCGCGTGATTGGCTGCAGCATCTGGCTGATGACGGATACATGCTGTTGGCCGGCCGCGTCAGGAAGCCGGAGGAGGCAGTGACCATCCAAAACATTCTGGAGAAACATTTCAAAAAGACAGTGAACCCAGATGCTCTTTTCTCTGAAGGCCAGGTCACCTCGCAGTTCAGCCCATTTGTGAACAGTATTGCGGGTGTCCCTGAGGAGTTCGGTCATGTGGTGTGGACGCAGGGCATGAGGAGACTGGCTGTGCTAGTGGGACGAGCACTTCGTTTCGGAGAGTCTGTCCTGCTTGTTGGGGACACGGGGTGTGGTAAGACCACCATCTGTCAGCTGTTTGCTGCACTGGCTGGACAGAAATTCTTCTCCCTGAACTGCCACCTGCATATGGAGACATCAGACTTTCTGGGTGGCCTTCGTCCAGTCCGTCACACGGGAACACAACAGGCTGATGCGGAGGATGGTCGTCTTTTTGAATGGCATGATGGGCCACTGATCCTGGCGATGAAGCAGGACGGAGTGTTTCTGATGGATGAAATCTCACTGGCAGATGACTCAGTGCTGGAGAGACTCAACAGTGTGTTGGAGCCTGAAAAATCTTTGGTGCTGGCAGAGAAAGGCAGTGGAGATGAGGAGGTTGAGCTCATTATTGCAGGGAACAAGTTCCGTCTTGTGGCCACCATGAACCCTGGAGGTGATTTTGGAAAGAAAGAGAGCAACAGTCGCAATGATCTAATCCAGATCATCCAACATAACCTGCGGCCTGGGCTATCTCTGGACCAGCATGACCACCAAGGTAAAGACATAGCAGAGCTCATGCTAGACTTCATCGACTGGCTGACCAATCAGGAGTTTGGTCGGCGTTGTATTTTAAGTGTGCGAGATATTCTGTCATGGGTGAATTTCATGAACACTGTTTGTGAGCGCGACGAGGATGGCTTTATGACCATGGGGGAGCTGGAAGAGGAGGAGCCGGATTGGGACCTAAAACTTGACACCGTAACAGCCTTTATTCATGCAGCTTGCCTCGTGTATGTGGATGGAATCGGTTCAGGAACCACAGTGTCAGCAGCAGAGAATGCACTGGTGGCACGCAAGTTGAGTCTGGAATACCTGGagaagagactaagcagaataaCAGAGCTGGATGAGGAGATGCAGGAAGCTATCAGAGTCTACAACACCAGCGTCTCCAGAGAGCCCCAGTGGGGTGAAGGGTTCTTTGGCATCGACCCCTTCTATATTGCTGCTGGTTCTGAGAGTGAAGGCAGAAGTCTGTCGGACTATGCTCTGAGTGCGGGCACCACTGCAGTGAATGCCCAGAGGATTCTGCGGGCACTGAAGCTTCAGAGACCCATACTGCTTGAGGGCTCTCCTGGAGTGGGCAAGACTAGCCTGGTTGCTGCCCTTGCCAAGGCTTCTGGGAACCATCTTGTCAGGATCAACCTTTCTGAACAAACCGATGTAACCGATCTGTTTGGGACAGATCTGCCAGTAGAAGGTGGGAAAGGAGGGGAGTTTGCATGGCGTGATGGCCCCTTACTTGCTGGACTGAAGGCTGGACATTGGATTGTTCTAGATGAGCTGAATCTGGCCTCTCAGTCAGTTCTGGAAGGTCTCAACGCATGCTTTGACCATCGTGCTGAGATCTATATCCCAGAGCTGGGCATGCGCTTCCACGTTCAGCAAGAGAAGACCAAGATCTTTGGCTGCCAAAATCCTTTTACACAGGGAGGAGGGCGCAAAGGCCTTCCCAAGTCCTTCCTTAACAGGTTCACTCAGGTTTATGTGGATGCACTAACCAATGAAGACATGCAGTTTATTGGGGACTCCATCTTTCCTAACATCGACAATGCAATCATCTCAAAAATGGTCCAATTTAGCAACCGGCTTGTCCAAGAAGTAATGGTTGACAGGAAATGGGGACAAAGAGGAGGACCATGGGAATTTAATCTCCGTGACCTGTTCCGCTGGTGCCAGCTGATGCAAACTGACCAATCACCAGGCTTCTTCAACCCTGGACAGCATGTTGGACTTGTGTATGCAGATCGCATGAGGACTGAAGCAGACAAGGCCCAGGTGTTAGCAGTGTTCAGGAAAGTGTTTGGAGAAGACTTTGAGCCTTACATGGGCTCCAGACAGTTTCATATCACACCACTCAACCTGCAGTTGGGTTACTCAGTCCTGCAGCGTAGTGGAGGGGCACCTATTGCTTTGGATCCTCCTTTGTCGATCACCCATCATTCTTTGCGTCCGTTGGAGGCTCTGATGAAGTGTGTGGAGATGGGTTGGATGGTCATATTGGTGGGTCCCACTGCGAGTGGAAAGAGCAGCCTAGTGCATCTGCTGGCACTGTTAACAGGACACAGACTGAGGGTCATGGCCATGAATAGCGCAATGGACACAACCGAGCTGCTGGGTGGCTTTGAGCAGgtggacATCATACGACCCTGGCAGCAGGTCTTGGAAAGCATGGACTATGTTGTTGCCATGGTGACCAGGCGAGGGCTGATGTCACTTGACGGAGCCGTGCAGGACACTGAGTTTCTGTTAAGCACCTGGAGCACTTTCCGCCGATGGCTGAGAGAGGAGGGGCTAGACACCACTGAGGGCCAGCTCACATTTGAGGCTTTAAACAAACTGGAGGTCATCATTGTTCTGCTGCACAAACTCAACACTAAACTCAAGGTCTTCACAGATATGTCAAAGCTGCAGATGGACTTCACTCTACTGAAAGAGCGTTTGGCACAGATGCAAGATGGCTGGACTCATGGTGGCTTTGAGTGGCTGGATGGGACGTTAGTTCAAGCGCTGCAGGCTGGAGACTGGTTGCTCATGGACAATGTCAACTTCTGCAGCCCTTCAGTGTTGGATCGACTCAATGCTCTTTTGGAGCCCGGTGGGTCTTTAACCATTAATGAACGAGGGATTATTGATGGAACGACGCCCACTATCACCCCCCACCCTAACTTCAGGTTGTTCCTCACGATGGATCCCACACACGGGGAAATCTCCCGAGCCATGAGGAACCGTGGTGTTGAGATCTACATCCCTGGCGAGCATGAAGGCGTTTGCTGGGATACTCTGGATCTGAAGATGGTTTTACACACCCTGGGCGTAACAGGAGACTGTGTGTGTGACCTGCTCATCTCCATTCATTCAGAAATCAAGAAGACCATATGGG

Function

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0006364 rRNA processing biological_process
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035600 lncRNA downstream 420450 23480453 ~ 23488144 (-) False XLOC_018066
TCONS_00036473 lncRNA downstream 711936 23194788 ~ 23196658 (-) True XLOC_018060
TCONS_00036472 lncRNA downstream 737235 23169183 ~ 23171359 (-) True XLOC_018059
TCONS_00036835 lncRNA downstream 739626 23160676 ~ 23168968 (-) False XLOC_018059
TCONS_00035585 lncRNA downstream 745016 23160676 ~ 23163578 (-) False XLOC_018059
TCONS_00035610 lncRNA upstream 118591 24064689 ~ 24122757 (-) False XLOC_018072
TCONS_00035615 lncRNA upstream 206580 24152678 ~ 24159764 (-) False XLOC_018073
TCONS_00035617 lncRNA upstream 225570 24171668 ~ 24181988 (-) False XLOC_018073
TCONS_00036474 lncRNA upstream 241879 24187977 ~ 24188631 (-) True XLOC_018074
TCONS_00036837 lncRNA upstream 288828 24234926 ~ 24272463 (-) True XLOC_018075
TCONS_00035606 mRNA downstream 32303 23860858 ~ 23876291 (-) True XLOC_018070
TCONS_00035605 mRNA downstream 56420 23847380 ~ 23852174 (-) True XLOC_018069
TCONS_00035604 mRNA downstream 65963 23838814 ~ 23842631 (-) True XLOC_018068
TCONS_00035602 mRNA downstream 251290 23650832 ~ 23657304 (-) False XLOC_018067
TCONS_00035603 mRNA downstream 252078 23651201 ~ 23656516 (-) True XLOC_018067
TCONS_00035608 mRNA upstream 26850 23972948 ~ 24122881 (-) False XLOC_018072
TCONS_00035609 mRNA upstream 28528 23974626 ~ 24022558 (-) False XLOC_018072
TCONS_00035612 mRNA upstream 203696 24149794 ~ 24182689 (-) False XLOC_018073
TCONS_00035613 mRNA upstream 204906 24151004 ~ 24183333 (-) False XLOC_018073
TCONS_00035614 mRNA upstream 206414 24152512 ~ 24165509 (-) False XLOC_018073
TCONS_00035595 other downstream 482940 23423846 ~ 23425654 (-) True XLOC_018063
TCONS_00035593 other downstream 659955 23245639 ~ 23248639 (-) True XLOC_018062
TCONS_00035590 other downstream 682218 23223900 ~ 23226376 (-) True XLOC_018061
TCONS_00035586 other downstream 745337 23161279 ~ 23163257 (-) False XLOC_018059
TCONS_00035582 other downstream 826404 23082069 ~ 23082190 (-) False XLOC_018056
TCONS_00035611 other upstream 137041 24083139 ~ 24122757 (-) True XLOC_018072
TCONS_00035616 other upstream 206701 24152799 ~ 24172140 (-) False XLOC_018073
TCONS_00035626 other upstream 1422412 25368510 ~ 25369880 (-) False XLOC_018081
TCONS_00035635 other upstream 1591482 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035636 other upstream 1592257 25538355 ~ 25540754 (-) True XLOC_018086