XLOC_018068 (si:dkey-15j16.3)


Basic Information

Item Value
gene id XLOC_018068
gene name si:dkey-15j16.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23838814 ~ 23842631 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035604
GCGAGAGTCAGACATGCGGGCACATTTACATCTTTTATTCATTATGCTTCATTTCAGCCGAGGTTGTGATGTTTCAGATGTGTCTCAGACTAAAGTAATATCAGGATACAGCGGTGGTTCAGTGCTTCTGCCCTGCTCCTGTGCTCAACCTCAGTCTACAGTCCACACATTCAGCTGGCAGTTTCAGCAAACTGTTAATACTTGGATTTCAGTATTTGAGAATCAGAAGTACAGAGACAGACTTGTGCTGTTTAATGAAAGTTCTCCAACAAACCTGTCTCTACTCATTTCAGACCTCAGAAAGACAGATGAAGGGTACTATAAGTGTCTGACTGAACAAAATACTCCTACATTTGTTCAGCTAACAGTTCAAGGATGTGACTTGGTCAATACTGGAAAGACAGTGGAGTTGACTGGAAATTCAGGAGAGTCTGTGCTTCTGCCCTGCTCCTGCACTGAACTACTGACCAAACCTGAACACATACAATGGATGTATATGACAGAGAATAATTATAAAGAAATTTACCCAAAGGAAGAGGTTGAGAGTCACAAGAACAGAGTGAAACTGTTAAATCAAAACACTCCAGGAAATCTGTCTCTGCTCATATCAGCACTGACCATAAAACACCAAGGAACCTACTACTGTTCTGTCTCGCCTCAACAAATAGTCTATTTTATACTTACTGTTAAAGAGAATCCATATACTCATCCAATTAGTTCAACAACACATGAACCTCCACACCACTTCACAAATCTTCCAGCAGCTCAGCCAGCACACAACACACTTCATTATGTTTTCATTCTTTTGGGAATATTTCTCTCAGTGCTGTTACTGACGTTACTAGTATTTATCTACTGGAGATGCAGAGGAGGCAGAACTGTGAAAAAGGAGATCACAAAGGAGTCCAATGATGGTGAAGCACTAAAGAAAGAACCAGACAGTCAGGATGATGTGATGTATTCTACTGTAGTCTATGTTAAAACAGCTTCCAAAGAATCTGACACACAACATCATTAAGAAGAGCTCACTGAGTATGCTAGTATCAATGTGAAACAGTAAATTGTCTCATTTTGTTACTGAGTTTTGTGTATACTCAAAAAAAGTCAGAACTGTTTGTTGTTAGGAGCTGCTTTAGGTGGCTCAAGAAAACTTTTGTAAAGAAGTCTAGAAAACACATCATAAAACTCACACAAACCATATTAGCACTGCTTTAGGTAACATCACAAACTCAAGCTAAAAATAttggataaaaaaataagattaaaatgtttgtaaactttTGTTGCACTCTGAGGTCACCTAAAATGTTAACAAGATTTGGTTTACATAAAAACATAGCAAAAgctagaaaataaatgaacaaaaaatatatataaattgtaatatattattgcaCATACTCTTTGtatactctttctttttttcccaacaCTTATTTGTCGCATTAATAAATAGGAAGTATTGTCACACTTAGCCAGGGGgttcaggtggtttgaaagacccaccccactactgacaaagtccagaatttggcccctATATGAGGTTATTTGTCtcatttttgacagtatgccatcataaatttaGAAAATAAGCGATAGAAGAAGACTTTAAGACaagttaaattattaattattcaaatagaAAAATTCTTACTGaagaaatgagctggccagtctGTTATTTGTCCACAGGCTACAGTTATTCATTTAAAACACGTTTTAACAGATTcctaactgtttttttatttattttttgaatgatAATGTAtaagcattttaaacatttttttttcatatttctttgttcaaaaatgtttatttaaaaccaacctcattacattatttatacaacTGTAAAAActtaatgcacatttgtaaaaaaaattgttttgtcaaCATAGCATAGTAAGCACTtagacaaaaatgtaaaaaatatttttgtttcattaaaaGGTGTGGTAATGataaccatccgacaagctaatccagcaaacaTTAATGCTTAaagtgtcactaaaatgcagtattagaactgtaaaatttcaaataaaatgaggcgaataactgcaaaaaggtccaatTCTCGAGGAGAAAAAAGAAGAACCCCTTTTAATAGGCAGGCTACAGGCCTGACTTCACACATtttctaacatgaactaataattaaCATTACACAATTATTAAACATATAATTAAACATCAGTGACTTTTTAGTTCAGGTCATTATTCACGCTattaaaccattaactaacacaacTTGCTTAATAAACTATCAATCCTATTTATCATTAGTAGTAAGGTAAAAGTTGGGTTCAGGTTTTGGGTAAGATTAGGGATGCAGTTTAAGATCTTACTTTaaaactactaatgaacagttaatatctttaATAAGCCAGTAGCTAATAGCATGAGCTGTGACCTAAATTAAAGTAATGTTAGCCAAACAtcaactaatgcattattaaaatccaaagttgtgatTGCTAATCCTAATTAACGTGAgcaaacatgaactaacaatgaacaatgtTTTTATTAACCGTTAACAAAGATGAACGAATAATGtaacaaatacaatttttgttAATGTTGGTAAATATGATCACTAACATTAGTGGAAACTCACTGTAAAGTTTTACTGAGGTAAACGCCCACTGCTATTATTGGCTAAATGTTAAAGGCGtattaatataatgaataaaaagttttGTTGTACTCTG

Function

symbol description
si:dkey-15j16.3 Predicted to be involved in several processes, including cell surface receptor signaling pathway; cellular response to lipopolysaccharide; and regulation of T cell activation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0042102 positive regulation of T cell proliferation biological_process
GO:0042130 negative regulation of T cell proliferation biological_process
GO:0006955 immune response biological_process
GO:0031295 T cell costimulation biological_process
GO:0071222 cellular response to lipopolysaccharide biological_process
GO:0007165 signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4680 Predicted to be involved in several processes, including cell surface receptor signaling pathway; cellular response to lipopolysaccharide; and regulation of T cell activation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000042683

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035604 True 2723 mRNA 0.34 7 23838814 23842631

Neighbor

gene id symbol gene type direction distance location
XLOC_018067 cbr4 coding downstream 181510 23650832 ~ 23657304 (-)
XLOC_018066 anapc4 coding downstream 344102 23475381 ~ 23494712 (-)
XLOC_018065 slain2 coding downstream 366495 23446243 ~ 23472319 (-)
XLOC_018064 slc10a4 coding downstream 397859 23431485 ~ 23440955 (-)
XLOC_018063 zar1 coding downstream 412475 23423814 ~ 23426339 (-)
XLOC_018069 si:dkey-15j16.6 coding upstream 4749 23847380 ~ 23852174 (-)
XLOC_018070 katna1 coding upstream 18227 23860858 ~ 23876291 (-)
XLOC_018071 mdn1 coding upstream 34668 23877299 ~ 23946296 (-)
XLOC_018072 bach2b coding upstream 130317 23972948 ~ 24122881 (-)
XLOC_018073 map3k7 coding upstream 307163 24149794 ~ 24183382 (-)
XLOC_017928 CU539064.1 misc downstream 13785113 10053405 ~ 10053701 (-)
XLOC_018060 NA non-coding downstream 642156 23194788 ~ 23196658 (-)
XLOC_018058 NA non-coding downstream 679316 23157083 ~ 23159498 (-)
XLOC_018056 NA non-coding downstream 755350 23081271 ~ 23083464 (-)
XLOC_018057 CU693368.1 non-coding downstream 757018 23081660 ~ 23081796 (-)
XLOC_018054 BX511028.1 non-coding downstream 928502 22910198 ~ 22910312 (-)
XLOC_018074 NA non-coding upstream 345346 24187977 ~ 24188631 (-)
XLOC_018075 NA non-coding upstream 392295 24234926 ~ 24272463 (-)
XLOC_018077 NA non-coding upstream 605376 24448007 ~ 24454929 (-)
XLOC_018078 NA non-coding upstream 886500 24729131 ~ 24732309 (-)
XLOC_018080 NA non-coding upstream 1465164 25307795 ~ 25311454 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_03538609_03541055 NA coding CI01000325 null 3538190 ~ 3541361 (-)