RNA id: TCONS_00035586


Basic Information

Item Value
RNA id TCONS_00035586
length 535
RNA type processed_transcript
GC content 0.41
exon number 2
gene id XLOC_018059
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23160512 ~ 23171430 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTACCGGCGCAGTTTTGACTCTGAGTTCACGGCTCCACTGGTGGCATTTCACGTGTGGCCTGCGCTGCTGGAGGGAGACACTGTCATACTGAAGGGAGAAGCGGTCACTAGGAGAGGAGCTCTGATGGCCAGTCATAGTCGGAGCCCCTCTCCTGGACGTCTCTCAAGCAGTCGACTTTGAAACCTGACCTCACTTCACACCAGATGCAGGACCAAACAAAAGCAGATTGATCAAaacatttctctttttttcaacttgaacgtttttttaaatgtgtgggaTGAATTAGAAACAAAAGCAGttacatttaaaagtaacttctGAATAGacattattaaagttttaaacaGTAAGCACTATTTACAAGTGTAAAAAACACCTGAGTGAACTACACTTAATAGGGGCCATTGGACTGGATAGGTAAACCTTAATTGTATcagatcatagatatatacacatgtacactGTATATCTATGGTATCAGATCAGCATAATGGCTCAAAGTTAAGAGAACAGCTCTCTTAACGTTGACAT

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0048545 response to steroid hormone biological_process
GO:0035694 mitochondrial protein catabolic process biological_process
GO:0035695 mitophagy by induced vacuole formation biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050522-306 Acts upstream of or within response to steroid hormone. Predicted to be located in cytoplasm. Predicted to be active in mitochondrial outer membrane. Is expressed in floor plate; ovary; peripheral olfactory organ; pronephric duct; and spinal cord. Orthologous to human SPATA18 (spermatogenesis associated 18).

Ensembl:

ensembl_id ENSDART00000143812

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036834 lncRNA downstream 1781 23157083 ~ 23159498 (-) True XLOC_018058
TCONS_00036471 lncRNA downstream 77815 23082802 ~ 23083464 (-) True XLOC_018056
TCONS_00036833 lncRNA downstream 77985 23081293 ~ 23083294 (-) False XLOC_018056
TCONS_00036468 lncRNA downstream 77991 23081293 ~ 23083288 (-) False XLOC_018056
TCONS_00036832 lncRNA downstream 78001 23081293 ~ 23083278 (-) False XLOC_018056
TCONS_00036472 lncRNA upstream 5926 23169183 ~ 23171359 (-) True XLOC_018059
TCONS_00036473 lncRNA upstream 31531 23194788 ~ 23196658 (-) True XLOC_018060
TCONS_00035600 lncRNA upstream 317196 23480453 ~ 23488144 (-) False XLOC_018066
TCONS_00036836 lncRNA upstream 745337 23908594 ~ 23946098 (-) True XLOC_018071
TCONS_00035610 lncRNA upstream 901432 24064689 ~ 24122757 (-) False XLOC_018072
TCONS_00035578 mRNA downstream 120004 22869608 ~ 23041275 (-) True XLOC_018053
TCONS_00035580 mRNA downstream 135056 23022985 ~ 23026223 (-) True XLOC_018055
TCONS_00035576 mRNA downstream 362485 22739792 ~ 22798794 (-) False XLOC_018052
TCONS_00035577 mRNA downstream 382885 22756556 ~ 22778394 (-) True XLOC_018052
TCONS_00035575 mRNA downstream 676658 22483048 ~ 22484621 (-) True XLOC_018050
TCONS_00035588 mRNA upstream 40689 23203946 ~ 23226453 (-) False XLOC_018061
TCONS_00035589 mRNA upstream 42877 23206134 ~ 23219964 (-) False XLOC_018061
TCONS_00035591 mRNA upstream 82363 23245620 ~ 23253630 (-) False XLOC_018062
TCONS_00035592 mRNA upstream 82363 23245620 ~ 23254876 (-) False XLOC_018062
TCONS_00035594 mRNA upstream 260557 23423814 ~ 23426339 (-) False XLOC_018063
TCONS_00035582 other downstream 79089 23082069 ~ 23082190 (-) False XLOC_018056
TCONS_00035581 other downstream 79483 23081660 ~ 23081796 (-) True XLOC_018057
TCONS_00035579 other downstream 250967 22910198 ~ 22910312 (-) True XLOC_018054
TCONS_00035566 other downstream 1251145 21897971 ~ 21910134 (-) True XLOC_018042
TCONS_00035565 other downstream 1298375 21839504 ~ 21862904 (-) False XLOC_018042
TCONS_00035590 other upstream 60643 23223900 ~ 23226376 (-) True XLOC_018061
TCONS_00035593 other upstream 82382 23245639 ~ 23248639 (-) True XLOC_018062
TCONS_00035595 other upstream 260589 23423846 ~ 23425654 (-) True XLOC_018063
TCONS_00035611 other upstream 919882 24083139 ~ 24122757 (-) True XLOC_018072
TCONS_00035616 other upstream 989542 24152799 ~ 24172140 (-) False XLOC_018073

Expression Profile

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