RNA id: TCONS_00035600


Basic Information

Item Value
RNA id TCONS_00035600
length 784
lncRNA type retained_intron
GC content 0.46
exon number 10
gene id XLOC_018066
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23475381 ~ 23494712 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaaacacaAGCACTCAGGTTCAGGATGAGTTTTTGGAGCTGCTGTTATGGGGCCATGCAAGCCCTGAACTTCAGGCTCTTCTCATGAATCAGCTCACAGTCAAGGGCTTGAAGATGCTGGGTCAGTCTATTGATTCTTCCTATTCCAGCATTCAGAAACTTGTTATCAGTCACTTGCAGAGTGGCTCTGAGGCGCTGCTCTATCACCTGAGCGAGGTCAAAGGAATGGCTCTATGGAAGCAGAAGTTTCAGCCTCTAGGCCTGGATCCTTCAGACATAGAGGATGCCATCGTAGCAGTGGGCTCTTTTACCCTGAAGGCCAgcgaacttttacaAGTCATCGATAAAAGTATGAAGAACTTCAAAGCCTTCTTCAGATGGCTGTATGTTGCAATGCTGCGAATGTCAGAAGATCATGTTCCTCCTGAGTTAAACAAGATGACTCAAAAGGATCTGGCTTTTGTGGCCGACTTCCTGTCTGAGCATTTCAGTGCTGTGAGTGAGAAATGCATGCTTTAAACTTTAATGAAACATTTAGTGTAAGGCCATGTTCACGTGTTCTGTCCTGTGTTTCAGAACGAAGAGCTGTTTGACCGGAAAGGAAAATATTTCAACGTTGAGCGTGTCGGACAGtatttgaaGGATGAAGATGAAGACTTGGTATCTCCACCCAACATGGATGGCAACCAGTGGGTGACGTTTGTAAAACAGAGCACTCACCTGAAAGACAGTCCACTGCTCTTCCCCACTTACCCACAAAAGTCTCTGCACTTTGTCAAGAGAC

Function

GO:

id name namespace
GO:0045842 positive regulation of mitotic metaphase/anaphase transition biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0030071 regulation of mitotic metaphase/anaphase transition biological_process
GO:0005680 anaphase-promoting complex cellular_component
GO:0034399 nuclear periphery cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041212-10 Predicted to be involved in anaphase-promoting complex-dependent catabolic process; positive regulation of mitotic metaphase/anaphase transition; and protein K11-linked ubiquitination. Predicted to act upstream of or within cell division and regulation of mitotic metaphase/anaphase transition. Predicted to be part of anaphase-promoting complex. Predicted to be active in nuclear periphery. Orthologous to human ANAPC4 (anaphase promoting complex subunit 4).

Ensembl:

ensembl_id ENSDART00000153060

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036473 lncRNA downstream 283795 23194788 ~ 23196658 (-) True XLOC_018060
TCONS_00036472 lncRNA downstream 309094 23169183 ~ 23171359 (-) True XLOC_018059
TCONS_00036835 lncRNA downstream 311485 23160676 ~ 23168968 (-) False XLOC_018059
TCONS_00035585 lncRNA downstream 316875 23160676 ~ 23163578 (-) False XLOC_018059
TCONS_00035584 lncRNA downstream 316879 23160676 ~ 23163574 (-) False XLOC_018059
TCONS_00036836 lncRNA upstream 420450 23908594 ~ 23946098 (-) True XLOC_018071
TCONS_00035610 lncRNA upstream 576545 24064689 ~ 24122757 (-) False XLOC_018072
TCONS_00035615 lncRNA upstream 664534 24152678 ~ 24159764 (-) False XLOC_018073
TCONS_00035617 lncRNA upstream 683524 24171668 ~ 24181988 (-) False XLOC_018073
TCONS_00036474 lncRNA upstream 699833 24187977 ~ 24188631 (-) True XLOC_018074
TCONS_00035598 mRNA downstream 8134 23446243 ~ 23472319 (-) True XLOC_018065
TCONS_00035597 mRNA downstream 39498 23431893 ~ 23440955 (-) True XLOC_018064
TCONS_00035596 mRNA downstream 41442 23431485 ~ 23439011 (-) False XLOC_018064
TCONS_00035594 mRNA downstream 54114 23423814 ~ 23426339 (-) False XLOC_018063
TCONS_00035592 mRNA downstream 225577 23245620 ~ 23254876 (-) False XLOC_018062
TCONS_00035601 mRNA upstream 373 23488517 ~ 23494712 (-) True XLOC_018066
TCONS_00035602 mRNA upstream 162688 23650832 ~ 23657304 (-) False XLOC_018067
TCONS_00035603 mRNA upstream 163057 23651201 ~ 23656516 (-) True XLOC_018067
TCONS_00035604 mRNA upstream 350670 23838814 ~ 23842631 (-) True XLOC_018068
TCONS_00035605 mRNA upstream 359236 23847380 ~ 23852174 (-) True XLOC_018069
TCONS_00035595 other downstream 54799 23423846 ~ 23425654 (-) True XLOC_018063
TCONS_00035593 other downstream 231814 23245639 ~ 23248639 (-) True XLOC_018062
TCONS_00035590 other downstream 254077 23223900 ~ 23226376 (-) True XLOC_018061
TCONS_00035586 other downstream 317196 23161279 ~ 23163257 (-) False XLOC_018059
TCONS_00035582 other downstream 398263 23082069 ~ 23082190 (-) False XLOC_018056
TCONS_00035611 other upstream 594995 24083139 ~ 24122757 (-) True XLOC_018072
TCONS_00035616 other upstream 664655 24152799 ~ 24172140 (-) False XLOC_018073
TCONS_00035626 other upstream 1880366 25368510 ~ 25369880 (-) False XLOC_018081
TCONS_00035635 other upstream 2049436 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035636 other upstream 2050211 25538355 ~ 25540754 (-) True XLOC_018086

Expression Profile

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