XLOC_018514


Basic Information

Item Value
gene id XLOC_018514
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 54164885 ~ 54173299 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037019
atactaaAGTGACAAAACGCTGCATCAGTGTTATTTAGATTAAATCTGATGATTCTTTTAAGCCAATCAGTTCAGTGTACATTGATTTGTCGATTCCCTGCCTGacttgttttcttttatattaaagGATTTAAGCAGTTCATGGCTACATTTACAGCTTGGTTTTAAACAATCTTTTATAAAACTACTaaagattaataaatgatgtattATTGAAAACTCATTCAATAATAACTctgaaaaatattgcaatattactAATAATGATCCTGATCACCAAATCAGCATATCCTGAATTAATAATACTGAATATTCAGtgttaaatcacagaaataaatttcACTATACTATATAATCCCATGCAAAAAAAGTTATtatgaatgataaaaatatttcacattttttcagtgtttctgatcaaataaatgcagctttaatGATCATCAGAGActgtaacactttaatttaggtCAAAATTGATGCTATTACCTTCTGTCTTATaacctgcctgttattaagatgTCAGCTGttcattaataattttataatgtaTCTTATTCTACAGCTTAGCCAATACCTAAACTCaccttctaccttactaactattaataatctGCTAATTAGTAGTTCATTAAGCTAGTGTTACTACttttaaactacatttcccatgatGATTCTCAGCCATTGCTTGGTATTTTACTAATGCTAAGTTTTCTATTAATGAGACGTTCCCAGGAGCACTTGAAAGCAGCATTTCTAGTCCctattaaaaaaatgtgcaaataaacgTGGGGCAAACGCAGTATGTTTGAGACTCCGGGCTCCTTTAGCTCCTCGATGGCCACTTTTTTCAGTGCTTTCCGTACACTGAGCAACCTcaacatctcacacacacacacacacacacactagaagtACAGCATCCTTTATGATTTCAGCAATAAACACTAGCAGAAGATCGGCGGAGTGTACTTCCCTTACTGTACTCACACACTGCTGAGCCTGGTGATTACTATGCTAGCAAATCTGTGGCAAAACTTAATTTCGAAATAGAATATGCAAAATGACAATGCAATATgcaaaatgacaatatttttccTTATTTACAAGTGCATTCTCCATGAAGTGTGtgcaaaatgatgtttaaatgatCTGATGACATTTGACCATTTACAAAATGTTAACTGCATACTGATTTTGATGCTTTATCAATTGTTTATaaagtaatttcgagaggatcatgtgcttacgATTGtccacggctggttctgcattagccaACAcgtgatttaccaatcagacagTTACTAAGTCATTATAAGCATTAAGAGTTTCGTACCacagttatcttcatcttgaagaatccccctaccaccccttctcctcctacCTTTTCCtagattgggcggcacggcggcccagtggttggcactgttgcctcacagcaagaatgtcactggttcaagtccttaccaggccattcaacgtttctgtgtggagtttacatgttctccccgtgcttgtgtGAGTTTCCCCTGGGTTGTCCGGTTTCCTcacaccatccaaaaacatgcgacttaagtaaattgactaatccaaattggcaccttAGACGTGCTCCTAGTCAGCAGTATATCTCTTCAAAGCAGTTCCTAATTGGTCATTAGtaaggccagacggaatctgcggacatttttttctatttctgctaAGACTTTtggtaaaaaatctgcggatttctgctgaattattttgggagtatcataactaaaaccttaatatatgaaaaaaaaaatcttttaaacttttatttaatgtttacagtgcaaatccaattagattttcttaatattaattaattcaataatatcaataatattactgtaaaactgagtaaatatagatttacacacatttacacaagtaaattaacagaattaatgatgggctaaaaatcagtggaattctgcgcgcgcagatttggtgtgggcctagtcattagCTATACCGCAGGGGGATCTCAAGAGCTACCTAATTTCAAACTTCCTTCTttccctgcaaacaggagggagccccgggctcgaggatcttatgagctcagggctctctcccaagacagcatgccaaacaagttttataatcaatcaagtgtgaactcttgaactttGGTTCACAAtggaaaatgtaaattatataattaattaccaAACTTTGCGCACACATCAAGGAAAATGCtcattcaaataaagaaaaacattgcCAATTTCCATATTGCGTGGCGTTTTACACATTACGTTTCAAATGTAATTTTGCTCCTGATTTGCTTTCATAGATTTGGTTCCTTTTCTtcttattttcctttatttttagattcttcttcttattcttcttcttattctgaTTGTTTTAGCATTAATGACAGTTGTAGCTGCAGTATATCTACCGTAGTCGTTTGAAATTGTCAAGATGTCATATTTTTCTACATGACTGTGTTACTAAACTCGTTTAGTAACTTGTTTTATATACAAGTGTTTCACATATAGCagtatatagaatatatataactatatataaatatatatatattattttctgtacATGATATGATTTGAGTCCAGGAGAGTGTGCTGAAGGAAGAAACGCCTCACTGTGCCGACTGCGTCCGATCATCGCGTATGATGAATGTACAGCGCATAGTTACGTCTCTGATCTCCCTGGTGCTATCCATGATTTAATGCTGACGTTAATCGATTCTTTAATGCTGAACTTCACTGCACTCCTGGAAAATCTTTGATTGTTTCGATTCAAAACTAGTGGTGGCGCTTTATGGTAACTTTCATCAATGCATCAGAAGTGGATATTAGTATTACTGCTGCTACGATAGTATGGTTTTATTTGCTATTAGAGCTGTGTGCTATATTGACAAATGATCACAAAATATGCCATATTCGATtggtaaatgtaatttattctatACCAATTATTTATGTGTTAAATGAATAGATTGTCTATTACATTTTTTACCCAACCAGATGAGGCTGTACTATATTTAGCTCCGCCCCACAAAAGGTGCTGTTCTACTATTGGCTAATGTGGCCcaaagctgaaaataaacactaatgggcGGAGTCGAGAcgagagaggaaaatgacaacagtcTATCAGTGTCGAAATATCCGCGCAGGTTTACGTTTATTCATAGAGTTTCAAAGACTAATCGtttgcacattttattttaaagcctGAACAAAGATTTAATTAGATCAGAAAAATATCGTAaaaatattattgcaatattgtgcagcccaaattCCTATTACTTTCTAAGTGAGAGGACttctacaacaaaaaaaaaacatgcagccATAAACAAATCACTGTAAAGCTGCGGTATTAGCATGTGAAAGTGAAAATGGGCGGGATAAAACAAGATAATGCGACACTAATAAGATGAGTGGTCACATTTTAATCTTCTGTTAATTTTATGCGATCATGTGACACGATTACACACTTGACTTCCTTTCATACGCATGTAATTGCGGCAGATTGTAAACGCAAGTGCGTGCAACTGTTTTCGCATTTCCAATGTAGTGCAATTAAATATGTATGAATGGACGTCAGTTGTGCAAATTGTGTGTGAAATGAATTTGTGAAACCAATCAaagttcaaaacatgacctctctgtgtAGAAATTTAAAACGCAGAGTAATCGCGAGttacatttacattgtaaaagcgctatatgaATAAACATGAACTGAATGGTTTTATCATCATcctaaaactcaaataaattttacaCACTCAAACTTTAACCATGGcataatgctgggttcacaccttCTCGTCACATGCTCCATATAACtcagaacgttttttttttgttttttttcggaAAATTTTATTTCGAATTGAATAGTTTTAACCTTcatagaatatacagttgaagtgttCCTCGTATTTGTGGTAAACGTTGCACAATCACCCTTTTTTTGCGCTGCTCGTCAGAAATTCGCCTTTTTTCGCACATTTGTATTGTATGTAATCTACTTTCGCAAAAACTTATGAACCCAGCATATTTAAAACCACTGCGACGGCCATAGAACCACACAGCACCGCAtcaacacacacacgtacacaaaaCAGCACACCATGCAGAACTGAAAATTGATGAAGGTTATTCTTCACGAAGCGCCACCAGTAAACCGACACGAGCCGGTGTTGTGGATGAAGAGTTGTTCACTTTTGCCTGCACACTGTGCATCTCTGAGCATTATAAGCTAAGCACTTGACAAAGTTTTGTACCGCAGGGTTTAGAGATAGAAGAGCTCTACTTTACCTCACAAGCTATAGAAGAGACCTCAGTTTATGACCGTATTTTTTTACCGACCGATAAAGCAACCGTTCGCCGTTTGGATTATTTCTCACTCCTTGTAAATCGTTGTGTTCCCTTTtgacattatgggatgtttagCGTGAGCTCGGTTCATTTTAAAGCCTGTTTCTTCACGGCCAAACGCATTTGCAGATCTTCTCGTTTTAATgcaatagttcacctaaaaatgtctgTTATTCATCCTCATGTCTTTCTAGACCTGTACAACACTAACGAAAACAAAAGGAATCTCTTTAAAGAAAGTTTGGTCACGCTTCACAATAAGGTTTtcttagttaatgtatttagtaaTATAAACAATAGTGTTGACATGCGTGCAAGATATCTACAACAGTATTTATTCACTAAattgtattgtatattattaaaatgcaGTCGTGCATTGTTAGTTCTTAACTCAAAGTGCGTTAGCTAATGTTGGTTTCTAATaataaatgttgaattttaataaatgcattactgTACTTTTCACTctcagttcatgttagtaaatgcactaAATATAACGTACATCCAGTACATTTTGCCATGTAACTAAACATTTAGATGCAAAACACTGATCTGAGCTGTACTAATTTACTAGCtccttaattaaacaaagcttgCACATAGAAAAACGGCTGAACGGAGCCTACACTAATCTACTTATTAATATTCAGTCACAAGGTGGCGCCAAACAGCTGAATTGTTATCTGAGAATAACATGCCTAAATGTTGTGATCGACCAATCAGATCATGTTCCAGACATCTGCgtaataacatgaactaatgaaaccttattataaagAACAACTGAAGTGTTATTTCTTGATGGAGCTCTTTTCTATGCGATTTAAAACAAAACTTGCTGTAAAAGTCTAGTGTTAATgaagaataatatttttaaaacgtgttgttttttttagaaaagtaaCCCATATGCACTATATTTCAGGCTATATGTGCTGCTTTATGTGAGAAACTAACCCAAAGTCACTATGCACTGATAATCCATCACATTGTGTTCATGCTGGTATATAAATGCTGCACAGGTGCTCCGCTGCACCGCATTAACACTGAAATATGACAGAAAAGAGCTGCTGCTTTACTACGGTGTAGATCGACATGACGGCtgatgttttcatttttaggtgaactgatAAATCTGGACGCGTCGCTCTATTCTAGCTCGTTCTCTGAGATGGAAAAACAGGGGCCGGATTCACGAAAAATCTTCTATGGGGATAAGTAGATGTAGAAATGGGCTGTTTACATGACATTGTGTGTAGCCTGTTTGTTTACCTGCTAATGATGTTCTTGAGACTGAAAGCgtaaatacataaacatttgCAAAGGCATAAAAAGTATTGACTTTTGCAGAACCTGCATTTTGCATCGTATTACAGTAATTCAACCCAATTCTtatgtttgcattgacttttgCTGTAAACGTGCCACACATTCGGTCATTCGCATCGCATTACGGAAATTTTATTCAACTCACACATTGGCATTGACTTTTGCGGCAAACACATTGCGCATTCTGCGTTATTCGCATCACAGTACGGTATTTCACCAAAACTTGtatgtttgcattgacttttgCAGCAAACCTGTTGCATGTTTTGCATCATTTGGATTGCATTATGGTACTTTGCTCTCTCATTTGCATTCACTTTTGCGGCAAATGAGTCACTCATTATTTACgttgcaatactgtaattcacCTCAACTCTTTGGATTGACTCTTGCAGTAAACGTGTCGCGCATTCTGCATTATTCGCATTGGGTTACGGTAATTCACCCCACCTCGAACATTCACATTGACTTTTTGCAGTGACTATCGTGTAATCGTAGCTTTTCGTCAATAACATTTTTCAGAAGTTGTAATCCTGTGTTCAGAGTGTGTCACTCGCTCTAGTTTACTCACCAGATGTTTTTCACCTCAAGCAAATGTTTCACTACAGTTGAATTATTTAAACTTTCGCTCCAGATACGGTTTTTGCGATTTTGCGGCAAACGTGTCGCACATTCTTCATCATTTGCATTACAGTACGGTATTTCACCTGCTTTGACTTTTGAATCAAACCTGTTGCATGTTTTGCATCATTTGCATTGCATTAAATGACCTCAACCTGCCCATTTGCATTAACTTTTGCAGCAGATGCGTCACGCATTTTATGATTATTCACGTTACAATACTGTATTTTGCCTCTGCTTGCTTGTTTGCATTAACTTTTGCAGAAAACCTCTCATGTGTTTTGTGATATTGCCATTGTAATATGTTAATTCAGCTCAACTTGCACACAAATATGTCGCGTTATGGTAATTCACCTCATTCCACGTTTGCTCCATATGCTCACAATTTGGACGAATTCTGCGTTTTTGCGGCAAACATGTCACTTATTCGCATCGCATTAAGGTAATTCACCTCAGCTCTCATGTTTGGGTTGACTTTTTATGTAACTAACGCACATACTTAATTCCGCATTTGAACCCAGCCTAAATCCTAAAAATTCCTACTATAAATAAGCATAAATGTTGTTCCTGAGTCCGGCCCCTGCTGACAGACGTGCGTGTTGGTTGGACGTCAGTATCTATGCTTCAAACGGAGGATCCGAAGCGTCTCGTAGCAGTAAATCCAGCTCTGTGTTCTCGAGACGGACTCTTCTACGTCTTCCAAAGCTCCTCCATTCTCTCAGCTCAGGTTTACACTATAGTCGAAGTTTACAGATGTTGGCTAGCAGGGTTAGACTGTGTATCGTGTGCCTGACGGgctgcttttctctctctctgagcTCAACGCGATGCATTTCCACAGGCACAGCTCGCATTTGTTCAGTTCAAAAGTAGTCGCATTTTATTGGGTGGCTCTGAGGATGGCGCGGGTCTGGGAAACAGCACAGATCTGTTGGAGTTTCGTCTGTTTTGTTGCTTTCCAATGAGATGTGAAGATGTTGCACCTTGTGTTTGACCCACTGAATAAAAGCTCTAACTCCTGACCTCTGACCCTTTGACCTTTTGACCTTACACAACGCACTGACAATCACCACATCGTTACGttataatatcaataaaagtcatcTTTGCAAATATGCACAAgctttttatcaatttaattctccgcggatcaccaaacttgttcctggagggccggtgtcctgcagatttcagctccaaccctaatcaaacacacctgaacaaactaatcaagctcttactagctaGCCAACagcatccaggcaggtgtgttgaggcaagttggagctaaaccctgcagggacaccggccctccaggaccgagattggtgacccctgctctatacttggtgtaaaattaattatatttttatttaaatgcttttttattttacattttataaagttAAAGAGATCCTTTGCAAAAAAACACCACAAATTACCACATCATTTAATTGGTTAATGTTAACTTTATCAGTCGATTATCAAAACTAATActccattttatttgtttaatttcagcattTACTGATTCCTTTTCTGATTAAATGTTGACTGTTAaagtttaatcattttaaaaggtgatctttaaacaatacacaagtttttttttcttttaattctgtttattaaatgattattaatgTTATGAAGTGCTTTGGGATTGCTTTGCTATGTTTAATgtacaatataaatacattttactgactgatgttgggtcaaatatgagcaaactcaatgttgggttaattagaatttaatttaaatgacacttttaagcCAGACGGGtgggtttgtccacatttgacccaatTTAAGTTACAAGTTACAAcgcagcatttttag

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1903706 regulation of hemopoiesis biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:0001885 endothelial cell development biological_process
GO:0006518 peptide metabolic process biological_process
GO:0050793 regulation of developmental process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0009790 embryo development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0030054 cell junction cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037019 True 8201 lncRNA 0.37 2 54164885 54173299

Neighbor

gene id symbol gene type direction distance location
XLOC_018513 NA coding downstream 10682 54149197 ~ 54154203 (-)
XLOC_018512 mgat2 coding downstream 89749 54067041 ~ 54075136 (-)
XLOC_018511 NA coding downstream 113391 54050432 ~ 54051494 (-)
XLOC_018510 NA coding downstream 118152 54046178 ~ 54046733 (-)
XLOC_018509 si:dkey-241l7.6 coding downstream 130342 54013212 ~ 54034543 (-)
XLOC_018515 CABZ01111496.1 coding upstream 1679 54174978 ~ 54192130 (-)
XLOC_018516 arf6a coding upstream 23244 54196543 ~ 54198130 (-)
XLOC_018517 faua coding upstream 28160 54201459 ~ 54208344 (-)
XLOC_018518 prpf39 coding upstream 40389 54213688 ~ 54245256 (-)
XLOC_018519 fkbp3 coding upstream 76040 54249339 ~ 54259780 (-)
XLOC_017928 CU539064.1 misc downstream 44111184 10053405 ~ 10053701 (-)
XLOC_018505 NA non-coding downstream 354216 53804362 ~ 53810669 (-)
XLOC_018501 NA non-coding downstream 872370 53287873 ~ 53292515 (-)
XLOC_018520 NA non-coding upstream 97592 54270891 ~ 54271455 (-)
XLOC_018521 NA non-coding upstream 166412 54339711 ~ 54345412 (-)
XLOC_018525 NA non-coding upstream 310466 54483765 ~ 54488224 (-)
XLOC_018529 NA non-coding upstream 413340 54586639 ~ 54610803 (-)
XLOC_018530 NA non-coding upstream 589222 54762521 ~ 54772668 (-)

Expression


Co-expression Network