XLOC_018744


Basic Information

Item Value
gene id XLOC_018744
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 12343618 ~ 12347702 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037306
gaaacacccaggcaggtgtgttgaggcaagttggagctaaacccctgtagggcaccagacctccaggaatgagattggtgacccctgatatagagtCTGTATGGAAGAGTCTTGAAGACGAGGAGGAATGGGTCTCGCTGCTTCTGGAGAGTGGAAATACTCTCCGCGCTGTTTCTCTGGGCATCTCACCCGCCCAATGAGAGAGAGGAGGCTTGGTCTTCACAAGGTCTCTCTCCCCCCCCTCCCTCCTTGAGTTCTCATTGTACAAAGACGTACAGGAGGAGAAAGCATGGCCAAAGGATTGAGCCTGCCGTGCACCTGCCCCCTGAAGCCAGCCAAACACAGGCACTCACTTCAGTCCTTCTCAACGGGAGTGCTGCTCTGTGGTCATAAAACCTCACAGATCCGTTTCTCTCCGATCCGGTTGTCTATTCCGAAGACGTCAGTTTGTTTACCATTCAATCAAACTTGCTCTCGTTTTCCCGAAGGAAAAAGTTTCTTGGGAGCTCAAGAGACTTGATGAAATTCTCAGGTGTTTTATCAATGCTGCTTAGATGTTTCTTCTAAATAAACCTAAGGGGACATATAAGACACAAACAAGACAACTGTTCACAGACAATGTGACGCACTGATAAATCTGTTGACGCAGTTGTGGATTTTAAAAAGTGACATGTGTTCACCTTGAACAAAAATGtccatacaaaaataaaacataattaaatcttttttttt
>TCONS_00039360
ctCGTATGTACGTGAAGCAGtcgAAGAGTCTTGAAGACGAGGAGGAATGGGTCTCGCTGCTTCTGGAGAGTGGAAATACTCTCCGCGCTGTTTCTCTGGGCATCTCACCCGCCCAATGAGAGAGAGGAGGCTTGGTCTTCACAAGGTCTCTCTCCCCCCCCTCCCTCCTTGAGTTCTCATTGTACAAAGACGTACAGGAGGAGAAAGCATGGCCAAAGGATTGAGCCTGCCGTGCACCTGCCCCCTGAAGCCAGCCAAACACAGGCACTCACTTCAGTCCTTCTCAACGGGAGTGCTGCTCTGTGGTCATAAAACCTCACAGATCCGTTTCTCTCCGATCCGGTTGTCTATTCCGAAGACGTCAGTTTGTTTACCATTCAATCAAACTTGCTCTCGTTTTCCCGAAGGAAAAAGTTTCTTGGGAGCTCAAGAGACTTGATGAAATTCTCAGGTGTTTTATCAATGCTGCTTAGATGTTTCTTCTAAATAAACCTAAGGGGACATATAAGACACAAACAAGACAACTGTTCACAGACAATGTGACGCACTGATAAATCTGTTGACGCAGTTGTGGATTTTAAAAAGTGACATGTGTTCACCTTGAACAAAAATGtccatacaaaaataaaacataattaaatcttttttttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037306 False 732 lncRNA 0.46 3 12343618 12347702
TCONS_00039360 True 651 lncRNA 0.45 3 12344345 12347702

Neighbor

gene id symbol gene type direction distance location
XLOC_018743 NA coding upstream 161234 12161079 ~ 12182384 (+)
XLOC_018742 NA coding upstream 263679 12076692 ~ 12079939 (+)
XLOC_018741 zgc:162344 coding upstream 269408 12036238 ~ 12074210 (+)
XLOC_018740 aqp7 coding upstream 322025 12010505 ~ 12021593 (+)
XLOC_018739 mlnl coding upstream 362095 11969603 ~ 11981523 (+)
XLOC_018745 CR293531.3 coding downstream 180418 12528120 ~ 12528236 (+)
XLOC_018746 CR388176.1 coding downstream 615020 12962722 ~ 12962838 (+)
XLOC_018747 NA coding downstream 739343 13087045 ~ 13092450 (+)
XLOC_018748 odf2a coding downstream 780040 13127742 ~ 13148318 (+)
XLOC_018749 sptan1 coding downstream 803235 13150937 ~ 13217905 (+)
XLOC_018732 NA non-coding upstream 766050 11565880 ~ 11577568 (+)
XLOC_018727 NA non-coding upstream 837734 11503197 ~ 11505884 (+)
XLOC_018721 NA non-coding upstream 1086442 11254561 ~ 11257176 (+)
XLOC_018753 NA non-coding downstream 986850 13334552 ~ 13336689 (+)
XLOC_018756 NA non-coding downstream 1092763 13440465 ~ 13452058 (+)

Expression


Co-expression Network