XLOC_001886 (slc38a9)


Basic Information

Item Value
gene id XLOC_001886
gene name slc38a9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6907715 ~ 6944407 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003728
GTTTAAATACTCTGTTTCCTTTTTCAAAACACTTGTTTGTCTCAGCAGATTGTCGGTTTATGTCTGCTTTTGGTGATGAGGGTTTAACTTGAGCACAGTATCATGGATGAGGACAGTAAACCGTTACTGGGGTCGGTCCCAACTGGAGATTATTACACTGATTCACTGGACCCCAAACAAAGAAGGCCGTTCCATGTGGAGCCCAGAAATATAGTAGGGGAAGATGTTCAGGAGAGAGTGTCAGCTGAAGCTGCGGTGCTAAGCAGCAGAGTTCATTACTACAGCCGTCTGACAGGCTCTTCAGACAGACTACTGGCACCTCCAGACCACGTGATTCCTTCTCATGAGGATATCTATATCTACAGTCCGCTGGGAACAGCGTTCAAAGTGCAGGGAGGAGACAGCCCTATCAAAAACCCCAGCATTGTCACAATCTTTGCCATATGGAACACCATGATGGGAACATCTATATTAAGTATACCATGGGGAATAAAACAAGCTGGTTTTACATTGGGCATTATCATTATTGTTCTTATGGGCCTGTTGACGCTCTATTGCTGCTACAGAGTGTTGAAGTCCACAAAATCAATTCCTTATGTAGATACCTCAGACTGGGAGTTTCCTGATGTGTGTAAATATTACTTTGGGGGTTTCGGAAAATGGTCCAGTCTCGTCTTCTCGTTGGTGTCACTGATTGGTGCAATGGTGGTCTACTGGGTGCTCATGTCTAACTTCCTGTTCAATACGGGAAAATTCATTTTCAACTATGTTCACAATGTCAACACATCAGATGCATTTGGCACAAATGGAACTGAGAGAGTCATATGTCCGTATCCAGATGTGGATCCACATGGGAACAGCAGCACCTCCCTGTACTCTGGAAGTGATAACAGCACAGGTCTTGAGTTTGATCATTGGTGGAGTAAAACCAACACCATCCCGTTTTACCTCATCCTCCTGCTGCTGCCGCTGCTCAATTTCCGCTCCGCTTCCTTCTTCGCCAGGTTCACTTTCTTGGGCACAATATCAGTGATCTATCTCATTTTTCTGGTCACATATAAAGCCATTCAATTGGGCTTTCACCTGGAGTTTCACTGGTTTGATTCATCAATGTTTTTTGTTCCAGAGTTCCGAACACTGTTTCCTCAGCTGAGTGGAGTTCTCACGTTGGcattttttattcataactgCATCATCACCCTCATGAAGAACAACAAACATCAAGAGAACAACGTCCGGGATCTGTCACTGGCGTACCTGCTGGTGGGATTGACGTATCTCTATGTAGGAGTGCTGATCTTTGCTGCTTTCCCATCACCACCGTTGTCTAAAGAATGCATTGAACCAAACTTTCTGGATAATTTTCCCAGCAGTGACATCCTGGTTTTTGTAGCGAGGACCTTCCTTCTGTTCCagatgaccacagtgtatcctcTGCTCGGGTACCTGGTGCGTGTGCAGCTCATGGGGCAGATCTTTGGCAACCATTACCCTGGTTTCCTCCATGTGTTTGTTCTGAACGTCTTCGTTGTCGGCGCTGGAGTTCTGATGGCCAGGTTTTACCCCAACATTGGCTCCATCATCAGGTATTCTGGGGCTTTATGCGGCTTGGCTCTGGTGTTTGTTCTTCCCTCTCTGATCCACATGGTCTCGCTGAAGCGCAGAGGTGAGTTACGCTGGACCTCCACCCTCTTCCACGGCTTCCTCATCCTGCTGGGTGTGGCCAATCTGCTGGGACAGTTCTTCATGTAACGCTGTGCCTGATGATAGCGGAGGAACTCTGTGTGGAGAGCTGAAACGGTTGCTTTTCACAGGAACGATGACTTAGTACTGGAACTTAATGATCACATCCCCATGGGTTTGAAAAGGCACCAAGCAGCTTAGACATTTTACAAGGGTTTAATTAAAGTTCTGCATTATT

Function

symbol description
slc38a9 Enables arginine transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport; cellular response to amino acid stimulus; and positive regulation of TOR signaling. Predicted to act upstream of or within amino acid transport. Is integral component of membrane. Orthologous to human SLC38A9 (solute carrier family 38 member 9).

GO:

id name namespace
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0006865 amino acid transport biological_process
GO:0003333 amino acid transmembrane transport biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005768 endosome cellular_component
GO:0005770 late endosome cellular_component
GO:1905103 integral component of lysosomal membrane cellular_component
GO:0071986 Ragulator complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function
GO:0015181 arginine transmembrane transporter activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04150 mTOR signaling pathway
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-061013-597 Enables arginine transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport; cellular response to amino acid stimulus; and positive regulation of TOR signaling. Predicted to act upstream of or within amino acid transport. Is integral component of membrane. Orthologous to human SLC38A9 (solute carrier family 38 member 9).

Ensembl:

ensembl_id ENSDARG00000032769

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003728 True 1921 mRNA 0.46 15 6907715 6944407

Neighbor

gene id symbol gene type direction distance location
XLOC_001885 ddx4 coding upstream 2141 6884123 ~ 6905574 (+)
XLOC_001884 NA coding upstream 151949 6754270 ~ 6755766 (+)
XLOC_001883 si:ch211-57m13.10 coding upstream 154600 6747720 ~ 6753115 (+)
XLOC_001882 si:ch211-57m13.9 coding upstream 172918 6729670 ~ 6734797 (+)
XLOC_001881 si:ch211-57m13.8 coding upstream 204903 6697369 ~ 6702812 (+)
XLOC_001887 psd3l coding downstream 85257 7029664 ~ 7233955 (+)
XLOC_001888 fut10 coding downstream 311288 7255695 ~ 7264766 (+)
XLOC_001889 purg coding downstream 619348 7563755 ~ 7565074 (+)
XLOC_001890 BX537303.1 coding downstream 628909 7573316 ~ 7578051 (+)
XLOC_001891 tex15 coding downstream 641521 7585928 ~ 7588878 (+)
XLOC_001871 NA non-coding upstream 790779 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 1026482 5880700 ~ 5881233 (+)
XLOC_001867 NA non-coding upstream 1114189 5788407 ~ 5793526 (+)
XLOC_001864 NA non-coding upstream 1319485 5587960 ~ 5588230 (+)
XLOC_001897 NA non-coding downstream 864304 7808711 ~ 7809243 (+)
XLOC_001898 NA non-coding downstream 898999 7843406 ~ 7849873 (+)
XLOC_001899 NA non-coding downstream 926202 7870609 ~ 7901888 (+)
XLOC_001900 NA non-coding downstream 1034110 7978517 ~ 7984582 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_01186035_01200177 SLC38A9 coding CI01000304 null 1185861 ~ 1200808 (-)