XLOC_018995


Basic Information

Item Value
gene id XLOC_018995
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 27614988 ~ 27626799 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039418
TGCTAGATGCCTACTGCCATCTCGTCCGGGCCTAAACAGTCATAGTATTCTTCTAAGCTTCTCCTGTATGGCAGCAGCTAACCTCTACAGTTCGAGGAGAAAAATCACAGAACATCCTCATAAAGCAATAGccatttttaaagaaagaaagctGACAAACGTCTCAGACGGATTTGGCTTTAATCCAAAGCAATTTTAGCTAATGTAAGCATGTGTATGTGAGCTTGCTTAAAGCAGCTTTGACAATATACAGAGTCTAAATTAAGACAGTAGAGAGATAAATGTCCAGAAAATGCTTTAATAGCACAACGTTACTAGGGAGCGAATAGTTTAGAACTGTAAACAAACCG
>TCONS_00039419
ACCATGTACAGAAGGAAGGGGAAGGCCAAGAGGAATATCCAGAGGTAGAGATGAAAGCAGTTTGAGAAGGTACTCTGATGAGGGTCCACGTACCATCCTCCGGTCAGAGAGGCCCACACTCCCTGCCGCAATATCTGAAGAGCCTGAGAGCCCATCTTATCGCTTCTGGATGAGACAACCCAGAGTTCTCCAAGTTCCCCTGTCAAACTTTCTAGTGCGTTACTTCCATCTAGAACCTCAGGGATGGACTTTCTCACACTGGAAATAATGAAAAGACtgtccaaagaaaaaaaattagcagAGTGCGAAACAATAGCGAATAACTTCAGGCCCTTGTTTTTTCAGTATCAACTGTTCGTTTGCATGCTGCTCCAGCAGTCCCTTGTTTGTAGTGCAGTTCATCAAGAGTTTTTGGCACAAATGTGACCCAAGGGCTACATGAAAAGAGTCATCCTGAGGAATCATCAAAACTGCTTGGTTTGGTTTCTTTACGACTTTCAAGCACTTTAAGCAAACACAATTCCATAAATAAATGAGCTGTTCTGATGACATATTTAAGATCAACAGGCTAGTCAGTATATTGTCATTGAGGCATGAAACTAAGGCATTTGTCTGATTAATGTAGCCTAATATTGGGTATCTAAAAATTAGAAGTCAGGTTTCATTTTCAACTAACTTTAGAGATATGTATAAAGTCACTGTACAACTGCACAAGCTTTTTAAACGATTATATAGGCAAAGACAGGCAGTTAGTGCGATTTAATGTCTCTATTGGCGTTCTATGTTtctgtatttactgtaaatacgGTATACAGCTTCAGAGTCCTGAGAATTCAATTTCTAACTCGGTTATGAACGTATCTGTAAACCTTTCCCGTTCCCCAAATAGAGATATGTGGATATGACACGGTTTAGAGTTTTAAATCTGAACTATTTTAGCCTACTGCCATCTCGTCCGGGCCTAAACAGTCATAGTATTCTTCTAAGCTTCTCCTGTATGGCAGCAGCTAACCTCTACAGTTCGAGGAGAAAAATCACAGAACATCCTCATAAAGCAATAGccatttttaaagaaagaaagctGACAAACGTCTCAGACGGATTTGGCTTTAATCCAAAGCAATTTTAGCTAATGTAAGCATGTGTATGTGAGCTTGCTTAAAGCAGCTTTGACAATATACAGAGTCTAAATTAAGACAGTAGAGAGATAAATGTCCAGAAAATGCTTTAATAGCACAACGTTACTAGGGAGCGAATAGTTTAGAACTGTAAACAAACCGTGTTAGTAACATAAACAGCGCTAACGGTGACAGCTGAACGACTAAATTTTAGCCAGAATCAACTGTTAAAGTAATCAAAAGGGACGCGACAATTATCTTAACTCTATTGTATCAGTTTCTCGGCTTGAATTGATAAATATCTCCCCTCACGGAGCTCAGTATCACCTGACACTTACTAGCCACACCGCTAACATGCTACAAGCAGTAGTGAGAAACCTCCGACTTTGGCATAAGTGTTTTGTAGCGAAATATTCAGATGTTGGTGCACCATTTCATTCCGTCAACACTCAGTGTTTTTTCTTAGCAGGGTCTGCATGAATTCACCCAGAAACAAAAACCGGAATAGCGCAGGGCAGCAAGACTGAACGCGAGTGAACGCTAGCATCGGCTAACGGCTGCAACGAGTGCTTCCTCTTTACGACGAAAATAAAATTACGAAACAAACAGACAGAACGGAAAATATTCCTACGTGGTCTCCACAGCAGCCATTTCCCTGGTACGTCCAAGGCCGCTGTGTAAAGAAAAACCCAGAGATAAAAATCCCAGGAATTGGGCTCGCTAAGTTCCAGTGTCGAATCGCTTCATTCACACAGGTAGCAAACACCCACCTACAGGAAGAGAACTGACATCGCGACGTGATTGGTTAAGGACAGGGGCACTATTGCAAAAGTAAAAATCTGAGCTCTGTCTGAAGGAAAAAAGGGGGAAGCGAGTAGAACTGCTAAATTATTCATCTCATCACAAATCCAGGGCTCAGAGTTCAGAAGGATGTGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039418 False 350 lncRNA 0.39 2 27614988 27620826
TCONS_00039419 True 2054 lncRNA 0.42 2 27619547 27626799

Neighbor

gene id symbol gene type direction distance location
XLOC_018994 zgc:165604 coding upstream 44772 27558381 ~ 27570216 (+)
XLOC_018993 pacs1a coding upstream 59643 27513859 ~ 27555345 (+)
XLOC_018992 bbs1 coding upstream 133606 27464538 ~ 27481382 (+)
XLOC_018991 cfbl coding upstream 153782 27448856 ~ 27461206 (+)
XLOC_018990 cfb coding upstream 183591 27416284 ~ 27431397 (+)
XLOC_018996 NA coding downstream 229293 27856092 ~ 27856367 (+)
XLOC_018997 pygma coding downstream 818253 28445052 ~ 28472239 (+)
XLOC_018998 slc22a6l coding downstream 851864 28478663 ~ 28494322 (+)
XLOC_018999 CR749775.1 coding downstream 864843 28491642 ~ 28491759 (+)
XLOC_019000 cox8a coding downstream 869395 28496194 ~ 28500704 (+)
XLOC_018986 BX530031.1 non-coding upstream 279727 27335125 ~ 27335261 (+)
XLOC_018980 NA non-coding upstream 793873 26819062 ~ 26821115 (+)
XLOC_018970 NA non-coding upstream 1113610 26490307 ~ 26501378 (+)
XLOC_018969 NA non-coding upstream 1125224 26482517 ~ 26489764 (+)
XLOC_018967 BX890629.2 non-coding upstream 1434973 26179899 ~ 26180015 (+)
XLOC_019005 NA non-coding downstream 1189784 28816583 ~ 28827128 (+)
XLOC_019006 NA non-coding downstream 1313064 28939863 ~ 28943876 (+)
XLOC_019009 CU463029.1 non-coding downstream 1479199 29105998 ~ 29106120 (+)

Expression


Co-expression Network