XLOC_019025 (foxi3a)


Basic Information

Item Value
gene id XLOC_019025
gene name foxi3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 30351256 ~ 30352951 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037738
CCTGACCAATCCACCTGTGTAAGACAGAGGCAGCAGAGCAGGAGGCATTTTCTCCTTCAACAAAGAGAAACGGGAAGAAAGCATGACATCATTTGTTCCACAGTCTCTTTCACCTCAGTTCCACAGCATGGGGCAGGAGTCCCAAGAGTTCAGCCTGTACGGTGACAACTTCTACAGCGCCCAGCATGTGCCTAGCCCACAACAAACCCTGCCATCCGCTTACGATTTCGGAGAATACGCAGGGCAGACCTCCAACCCTTACCTGTGGTTCAACGGGCCAGGACTCAGTCCAGCTCCTTGCCTCACCACAGGGCCTCAGCACTATGGGATGGCGAAGCAGTATGTGGGCGCAAGTGGAATCGGAGGCTCAGAGGGTGCCTTCAGCTGGTTCTCTCTGCCATCCCAAGAAGATCTGATGAAACTCGTGAGACCTCCCTACTCGTACTCTGCACTTATTGCGATGGCAATACATGGAGCTCCAAACCGCCGGCTCACCCTCAGCCAGATCTACCAGTATGTGGCTGACAACTTTCCTTTCTACAACAAGAGCAAAGCCAGCTGGCAGAACTCAATCCGGCACAATCTCTCGCTCAATGACTGCTTCATGAAAGTGCCCAGAGATGACAGCGATCCAGgaaAAGGCAACTATTGGACTCTTGACCCAAACTGTGAGAAGATGTTTGATAATGGAAACTTCCGGCGCAAGAGGAAGAGAAAGTCGGACTCTCAGGCTGAAGAGGAGGGAAAAGGGTACTCTGGATCAGACTCTGCTCTGTCCAGTCCTAAAAACCCCAGCGACTCCTCGGAGAGAGGAAACTCTCCAATCTCCACAGATCAAGCTCCGTGTCTCAACAGCTTCCTAAATCAAATGGGGGATGTGGCTTCAGGATCCAGAGAGGCTCTCCTCCCTTCTCCTCTGGCTGTCCCGCTGAGCCAAAGGTCATCTCCGACTGGGGTCTATGGCTCATACTCACCGAACGCAACCATGCCACAATGGGAAACCCAAATCCCTCAATCCAGCATCTCATCCACTCCCTACAAAGATGGCTATAGTGACTCAATGCTGAACCCGTACAGCAGCCAGCTCTATCCAGTGCTGGGATCCTCTGATTTGCTGTATCCACGGGAGGGATCTGAGGTGTAATGTGGGACATAGCATTGTCGGGTATGAACCAAGGCCCCAGGCACTTGAGGGAGCGGCCGGCCTGCATGGTGAGCCCAGTTCTCATCGCGGTGCCTGAGTAAGCAGGTCCGAGTGGACGCAAAGAAGATTCCCTTTATCAGACAGTTGTGTGAATGCTCTCACGCGCTCTTCTAAGACTAACATGCTGACATTGTCAATTCATGTTGCGCTCAGAGATGGCAGCAATCACCCCAGGCTACTGCTCCCAgtcatgatttattttatctgtgttgtggtttttgttttgttattgcaATACAAATTGAAGCCTGGAACATTTAAAATGCACTGAACTTTGACATAAATGTGACTTTGTTCGTTGTTCAATATTTTGTATCTGTAATGTGattgtaatatatacatatatatataatgtatttggCAAAATAAACATGGATATTTGCTACCA

Function

symbol description
foxi3a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within epidermal cell fate specification; ionocyte differentiation; and water homeostasis. Predicted to be located in nucleus. Is expressed in ectoderm; integument; ionocyte; ionocyte progenitor cell; and yolk. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 4. Orthologous to several human genes including FOXI1 (forkhead box I1).

GO:

id name namespace
GO:0030104 water homeostasis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0009913 epidermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0009957 epidermal cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031126-3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within epidermal cell fate specification; ionocyte differentiation; and water homeostasis. Predicted to be located in nucleus. Is expressed in ectoderm; integument; ionocyte; ionocyte progenitor cell; and yolk. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 4. Orthologous to several human genes including FOXI1 (forkhead box I1).

Ensembl:

ensembl_id ENSDARG00000055926

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037738 True 1592 mRNA 0.50 2 30351256 30352951

Neighbor

gene id symbol gene type direction distance location
XLOC_019024 lcp2a coding upstream 3664 30306369 ~ 30347592 (+)
XLOC_019023 zmat2 coding upstream 51207 30293564 ~ 30300049 (+)
XLOC_019022 BRD8 coding upstream 114460 30194904 ~ 30236796 (+)
XLOC_019021 NA coding upstream 164935 30184309 ~ 30186321 (+)
XLOC_019020 NA coding upstream 167702 30163899 ~ 30183554 (+)
XLOC_019026 CR749164.1 coding downstream 2816 30355767 ~ 30361679 (+)
XLOC_019027 snx12 coding downstream 117858 30470809 ~ 30488267 (+)
XLOC_019028 slc7a3a coding downstream 149051 30502002 ~ 30537411 (+)
XLOC_019029 rab38c coding downstream 196561 30549512 ~ 30560490 (+)
XLOC_019030 si:ch211-200p22.4 coding downstream 210164 30563115 ~ 30583086 (+)
XLOC_019017 NA non-coding upstream 323627 30022933 ~ 30027629 (+)
XLOC_019015 CU855895.2 non-coding upstream 364360 29986796 ~ 29986896 (+)
XLOC_019014 CR847571.3 non-coding upstream 744806 29606327 ~ 29606450 (+)
XLOC_019039 NA non-coding downstream 1382238 31735189 ~ 31737398 (+)
XLOC_019040 CABZ01006935.1 non-coding downstream 1677685 32030636 ~ 32030752 (+)
XLOC_019041 NA non-coding downstream 1692473 32045424 ~ 32070143 (+)
XLOC_019042 NA non-coding downstream 1725106 32078057 ~ 32099320 (+)
XLOC_019044 NA non-coding downstream 2053812 32406763 ~ 32411647 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_01990505_01991683 FOXI3A coding CI01000006 null 1990057 ~ 1991779 (-)