XLOC_019026 (CR749164.1)


Basic Information

Item Value
gene id XLOC_019026
gene name CR749164.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 30355767 ~ 30361679 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037739
gtgtcaccgactcggtcccagtcattcccctcgctgaccagcagaggtcaccatctccggacttctaaccattacgtcatccttctcactcagatcccagcacacctgttctccatctcactaatgacccacgtaccacatataagcagctcacacacacacttcattgcgaagtcttgtttagccccggccagcatttctgagcgttctatcctgcctgatctcccgtttaccacttcagcccgttcctcgactctgctctgtcttctgcctgcccttgacctaaagcctgattacacggactctgattctcgctgcctgcccctgactaaagcctgtattacggactctgaaccacgctgcctgcccttgactcaagcctggtaatcactctgcctctgttatctgctaatcatcgttgagttgtatgttgtatgttcgcacagccgtgcgaggtgttgatgtttacgtgtgacttaataaatactgcaaaatggatccctccgtgtcagtctccccgttacagaagacttcgcccaacacggatcccgcagccatccaggttttgtctcacgaagtcacaacacaagctcaggtattgtcaacacaccaacaacaactaacacacctaactcagttaacagatgaactggtgaaatccctccaaaacctgcaagctgctgccactgcgcaacccaccgccaactactctccaagtccacttgttgttgcacaacccccgatgacttccggagttcgattggcttttcctgacaagttctcaggtaacccagcaaaatgtaaaggcttccTATTGCAATGTAAACTGTTTATCGCACAACAAccccatctgtttaaggacgaaaacaggaaaattgcttttgtgtgctcactgctcactgggaaagcgctagactgggctactgcagtttggccagacagtaccccgatatttccctcgtttaatgactttctcaaacgtttctgcactgtgttcgatcatccggagggtggtcgtaacgctggcgaggagctattgtgtatccaacagggagatcgctccgCAGCTGAGTTCGCCCTGCAGTTCCGCACCTTGGCAGcgcaaactggctgggctgatgatccgctTGTCACGCTCTACAGAAGGGCTCTAAAGCCAGAATTGCAGCgagagatggcatgtcgtgacgaTGGGAAAACACTGGATCAACTAATCGAGCTTtccataaggttagacactctcctccgcactcgcaatccgctctgctcaattgcttccagtcctgtatcccctgaaacctccgctgaacccatgcaattgggTAGAACCCGTCTGAACCCAGAAGAGCGAGAACGACGGAGAAGAAATCACCTGTGCATTTACTGCGGATTTCCAGGTCATACgaaggttttatgtcccaacaagcctctCCCTAAAACCCTCTCGGTGAGTGCAACCACTATGTTCACTACCACTAATAATGTTGTGAATCTACCTGTCACTTTGAGAAACGATGGAGATGAGATTGAGACtatggccatgatcgattcaggagccgctggtaactttattgattacacgtttgccaccactcactccattcctttaacctcctgtgattcctccatagccatcactgctgtagaTGGGCGCCCTTTGGGAGAAGGACGTATAAAATTCCAGACCCTGCCAATCTtgcttcaaacaggctctctccatgaagaAGAAATTTCCCTTCTTGCCATCAACTCCCCTAAACACTCTGTGATTCTTGGGTTACCATGGCTACAACAGCATGACCCTCAAGTCTCttggagaactggtgagatcatAAAATGGAGCAATCAATGCTTTACCCAATGTCTGCATCCTGTTTCCCCTATCCAGATCAACACAATTAACAAGACCGAAGACTCTGAACTCCAGCATGTTCCTGATGCGTATCACGATCTAACTGAAGCATTCAATAAGCAGAAGGCTACTAAGCTCCCTCCTCATCGTGATAATGACTGTGCCATTGAGCTGCTACccggcaccacgccccctcgtggtcgcatCTTCCCTCTCTCACAACCTGAAACTGAGGCTATGAAGAAGTACATCTCTGAGGAGCTAGAGAAAGGATTCATTCGACCATCTACTTCTCCCGCTTCAGCAGGGTTTTTCTTCGTTAAGAAGAAGGATGGCAGCTTACGCCCTTGCATTGATTACCGAGGCTTGAATGAGATCACAGTCAAATACCGCTACCCATTACCATTGGTTCCTGCCGCCCTTGAACAACTCCGATCCGCCCAGTATTTCACTAAGTTGGACCTCCGTAGTGCCTATAACCTCATCCGCAtacgacagggagacgagtggaaaaccgggttctctacaatTGACGGCCACTATGAATatctcgttatgcccttcggcctagcaaacagtccttccgtgttccaggcatttgtaaatgagatatttagagacatgctcaacaaatgGGTCATAGTATATATTGACGACATCCTGGTCTATTCCAATTCGCTATCTGAGCATATCCAGCACGTTCGGGCAGTGCTCAAACGTCTCATTAAAAACCAGCTGTATGCAAAAAGCTCCAAGTGCGAATTCCACCAGACCTGCATCTCATTCCTTGGCTACATTATCAGTCCAGAAGGCGTGGCCATGGACCAGCAAAAGGTTGACTCTGTGACACAATGGCCGCAACCCGAAACCATCAGGCAACTAcaacgattcctgggctttgcTAACTTCTACAGGCGCTTCATACGGAACTTCAGTTCAGTGGCTGCCCCACTGACCGCCATGGTCAAAGCCAACAATGCTCGCCTTAAATGGAACCCCGACGCTGTCCGAGCATTCACCCAGCTAAAGACTcgcttctccagtgcacccattctgcgtcatcctgatcccgaaCAACCCTTTGTAGTCGAAATTTACGCGTCCAACACTGGAattggagccatcctgtcccaacGATCCCTAGTGAATaagaagctccatccctgtgcATTCTATTCTCGCAAGCTCAACTCCGCTGAACGGAACTACGATGTGGGAAACCGAGAACTCCTCGCCATGAAAGCCGCGctagaagaatggagacactggcttgaggGCGCAAAACACCCTTTCATCGTCATCACTGATCACAAGAACCTAGAATACATCCGGTCTTGTAAACGTCTGAAtcctagacaggcaagatgggcgctgtttttcacccgatttgacttccaagtcacctatatccctggttcaaaaaacatcaaagcagatgcTCTGTCCCGCCTTTCAGACGATGAGACCTCTGAAATCCCTGATGAACCCATAATCAAAGATCCTCTAATTGTCGCTCCCATCCAGTGGGATATAGAACAGGAGATCCTTCAAGCCGCCGAAAATAATCCTTCTCAGCAGCCCTGTCCAGAAAATAAAATCTTTGTTCCCCCGTCACTTCGAGAAAGACTCATCTccgaggtacatgaccaccccagtTCCGGTCACCCAGGCAGCACAGCCACCGTACAAATGATCCAATCCCGCTACTGGTGGTCATCCATACACAAGGATGTAATCAACTTCATTAACAGatgctcaccctgtcagatgtccaaacactcacgtcaccgtccagctggattactccaacccctggaggtgccacaTCGTCCTTGGTCACACATCGCTATAGATTTCATCACCGATTTACCCATATCTCAGGGCAAAACCACCATCCTCACAGTAGTGGACCGATTTTCAAAATCCTGCCGCCTTATCCCCATTTCCAAACTGCCCACAGCCATGGAAACGGCCGAGTTACTCTGCGAGTGTGTGTTTCGGTACTATGGTCTCCCCGAAGACATCGTATCGGACAGAGGTCCCCAGTTTACATCCCGACTCtggtcagcattctttaaaaatctccaaatcaacgttagcctaacatccggctaTCATCCCCAATCCAACGGGCAGACAGAGCGCTTGAACCAAGAAATCGGGCAATTCCTCCGCACGTATTGTCATTCGAACCAGAACGAATGGGCCAAATttttgatgtgggcagaatatgctcagAACTCCCTCAGAAAGGCATCTACAGGACTAACCCCATTTCAATGCGTGCTGGGCTTCCAACCTCCGCTCTTTccctggtccggcgagacctctgaactccctgcggtggatacctggtttaaaaactgcgaagaggtctggaacgcagctcatactcacctctctcacgccgtaaggcgtttcaaggaacaagccgatcgacaccgacgtcctggtcccatgtattccccaggacaatgggtatggctttccacccgcgacttacgcctcaagctgccctgcaagaaactcagtcccaggtacgtgggtcctttccagatagaaagacaaatatctcctgtttcgttcagactgacactccctaatcattttcgtatttccccaactttccatgtctctctgctcaagcctgctgctggtccagcagagacggatagggaggtggcagccggtgaacagggtcccccgcctctcatgatcgatgGCGAAGAGGCTTAccagatccacgagatcctgagatccagacgccggggcggacaactccaatatctcgttgattgggaggggtacggtccggaggagagaccttggattaaccgcaaggacatcctcgacaccacactactggaagagttccactcacaacatccggagatgccggcccctcgcccccgtggaagaccccggcgtcgagaattgcctcacttcaggagccgttcgttgggggggggctctgtcaccgactcggtcccagtcattcccctcgctgaacAGCAGAGGttaccatctccggacttctaaccattacgtcatccttctcactcagatcccagcacacctgttctccatctcacttatgacccacgtaccacatataagcagctcacacacacacttcattgcgaagtcttgtttagccccagccagcatttctgagcgttctatcctgcctgatctcccgtttaccacttcagcccgttcctcgactctgctctgtcttctgcctgcccttgacctaaagcctgattacacggactctgattctcgctgcctgcccctgactaaagcctgtattacggactctgaaccacgctgcctgcccttgactcaagcctggtaatcactctgcctctgttatctgctaatcatcgttgagttgtatgttgtatgttcgcacagccgtgcgaggtgttgatgtttaagtgtgacttaataaatactgcaaaatggatccctccgtgtcagtctccccgttacagagtGTGTCccttttttacaaacatatctacaatgttGACATGTTGAAAATTCAGGTTCACAAGTGAAGTTCAGTTAAGAGCATTTGTGGAGTGATGTTAATGAATCACAGTCAGGCATACATCATGAAAAATGTCAGATTAGCTTATactatacatacatttatatctttatttatgtttagaaatgtataaatacattaatatctTAACCTAAAAGTATATTTCACCCCCAATATTAATTCTTTCGTCAtttacccagcagacacacaacatcataagatgttaaaataaatttagGTTGCCCTTATCttaggacaatgttatttttatgtcCAATAACGGTGTGAaatgacattaatatttagttgattttaggttgtgttggaaagtgaccaaaatccaacatcgaggcAACATATTGACGTTAAATTGCTACCCATGTCCAATGTTGGACAATGACATCGGCCTGACTTTAAGCTCTGACGTCAACACGATTTTCATTTTTACCCAAAACGCAACATCCCATGACATTGGGGAAAAACTTCagcctgtgcctgctgggta

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000116832

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037739 True 5913 mRNA 0.49 1 30355767 30361679

Neighbor

gene id symbol gene type direction distance location
XLOC_019025 foxi3a coding upstream 2816 30351256 ~ 30352951 (+)
XLOC_019024 lcp2a coding upstream 8175 30306369 ~ 30347592 (+)
XLOC_019023 zmat2 coding upstream 55718 30293564 ~ 30300049 (+)
XLOC_019022 BRD8 coding upstream 118971 30194904 ~ 30236796 (+)
XLOC_019021 NA coding upstream 169446 30184309 ~ 30186321 (+)
XLOC_019027 snx12 coding downstream 109130 30470809 ~ 30488267 (+)
XLOC_019028 slc7a3a coding downstream 140323 30502002 ~ 30537411 (+)
XLOC_019029 rab38c coding downstream 187833 30549512 ~ 30560490 (+)
XLOC_019030 si:ch211-200p22.4 coding downstream 201436 30563115 ~ 30583086 (+)
XLOC_019031 clcn5a coding downstream 300584 30662263 ~ 30696595 (+)
XLOC_019020 NA non-coding upstream 172213 30163899 ~ 30183554 (+)
XLOC_019017 NA non-coding upstream 328138 30022933 ~ 30027629 (+)
XLOC_019015 CU855895.2 non-coding upstream 368871 29986796 ~ 29986896 (+)
XLOC_019014 CR847571.3 non-coding upstream 749317 29606327 ~ 29606450 (+)
XLOC_019039 NA non-coding downstream 1373510 31735189 ~ 31737398 (+)
XLOC_019040 CABZ01006935.1 non-coding downstream 1668957 32030636 ~ 32030752 (+)
XLOC_019041 NA non-coding downstream 1683745 32045424 ~ 32070143 (+)
XLOC_019042 NA non-coding downstream 1716378 32078057 ~ 32099320 (+)
XLOC_019044 NA non-coding downstream 2045084 32406763 ~ 32411647 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2256945 NA non-coding NC_050571.1 CM025858.1 17613455 ~ 17614393 (+)