XLOC_019033 (trpc2b)


Basic Information

Item Value
gene id XLOC_019033
gene name trpc2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 30746348 ~ 30765533 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037754
ATCTGAAGATGGAAAGCCTCACGCCGGATCAATGGCGCGAGATTGTGAACAAGAAGTTCCGCTTCCCTCCGGAGCTTCTTGGCGCCATCCGAGAGGGCAACTTGAACTTGGTGTCGTCCCTGCTGAAAACCGGTGACGGCATCATCCGCCAGCTGGACGACTCCGAGGACCGGCAATGGAGAGAAGCGCTCAACCTGTCCATCCGACTGGGCAACGAGGACACCATGGCCTCCCTCCTCCAAGGGGTCAAGTTTGACTTCCGGCAGATTCATGAAGCTCTCTTGGTGGCCGTGGACACCAACCAGCCTCGCGTGGTCAAGCGTCTCCTGGACCGGCTGGATCAAGAGAAGGGAAACAAGATGGATGTGCGCTCTTTCTCTATGGCCATCTTCGACCACTCCATCGATGATTCCCAGTTTGCCCCTGGAGTGACGCCGTTGACCCTGGCATGTCAGAAGGATCTGTATGACATCGTTACTATGCTCAATCAGAAGGGTCACGAAATCCCTTGGCCACATAAAATATCATGCGCCTGTCTGGAGTGCACGAATGGAAGGCAGTACGATCTGCTCAAGTTCTCGTTGTCTCGTATAAACACTTACCGAGGTATTGCCAGCCGTGCTTACCTGTCCATCACAGCAGAAGATGCCATGCTTAGTGCCTTTCGGCTCAGCCGGGATCTCCGCAAGCTGTCTAAGAAGGAGCCGGAGTTTAAGCCTCAGTATCTCAGCCTTGAGCAGGTGTGCCAGGAGTTTGCCGTGGAGCTGCTGGGAATGTGCCGGAACCAGAGCGAGGTTACCACCATCCTGAACAGCTGTGGAGATCGAGATGAGGACAGTGAAGATGAGCTGGACCACCAGACCTTTGAGGAGGGCATTCCAAATCTGGCCCGCTTGAGACTCGCTGTCAACTACAACCAGAAACAATTTGTAGCCCAccccatctgccagcaggtgctCTCCTCCATCTGGTGTGGAAACCTCTCAGGCTGGAGGGGCAGCAGAACGTCCTGGAAGCTCCTTGTGTCTTTTGGGATCTTTCTGACTATGCCTTTCCTCTGCCTCATCTATTGGATTGCACCCAAGTCAAAGTTGGGAAAGATTTTAAAGATCCCTGTGATTAAGTTCCTGCTCCATTCAGCTTCATATATGTGGTTTCTGATCACTCTATTGGGGGAGTCCATTGCAATGGAGGTTTATCGGGAAAGCTTTGCCACACGTCAGCACACCATCCTGCACAACTCTTTCCACATGGTCTGGGTGGTTGGTTTTTTCTGGTTCGAGTGTAAGGAGGTTTGGATCGAGGGCTTGAGGAGCTACTTCTTGGACTGGTGGAACTGTCTGGACGTGATGGTTCTCAGTATGTATCTGGCTTCATTCGCCCTGAGATTGGTCATCATGCTCAAAGTCCACTTCCTCTGCCAGTTACAAGACAATCAGGACGAGTGTGTCTACTTCACCGAAACCATGCGTGACCAGTGGCATCAGGAGGATCCGCAGTTCATCTCTGAGGTGCTGTTTGCCGTCACCAGCATGCTGAGCTTCACTCGATTGGCATACATCCTTCCAGCACACGAGTCTCTTGGTACGCTGCAGATCTCCATTGGAAAGATGATCGATGACATGATGAGGTTCATGTTCATTTTGGTGATCATCGGTACTGCGTTTCTCTGTGGCATCAACAATATCTATGTCCCGTATATTATCTCTCCAAATCTCGGAAAATTAAATGAGACCTTCAGCTTCCTCTTCTGGACCATGTTTGGGATGGCCGACCAGACGTATGTAGACATGCCGGCGTTTGCTTTGGCTGAGCTTGTTGGCAGGATCCTGTATGGCATCTACACGCTGATCATTGTCATTGTGCTTCTGAACATGCTCATTGCCATGATCACCAACTCTTTTCAGAAAATTGAGGACGATGCTGATGTTGAGTGGAAATTCGCACGTTCCAAGCTTTACCTGAGTTACTTCAGAGAAGGACTGACTATGCCCGTGCCCTTCAACATCATCCCGTCTCCAAAGGCTGTTTTCTATCTTTTGAGAGGAATCGTCAAGcggatctgctgctgctgcttcaacTGTAACTCAGCTCCAGATTATCCTCCGCTAACATCAATGaagGATGAAGGAGGCTCAGGAGAAAACCGCATTCCCTACAGACAGCAGGTGATCCGCGCTCTGGTGCAGCGCTACATCGAATCTGCCAGGAGAGAGTTTGAAGAAACAAAACGCAAAGATGTTGGGAACCGGATCACGGAGCTCAGCAAAGTGATCGGCCATCTACACACAGAAATGAAGCAAATCCACTCAAACCTGTTCAACTACTCGGGCAACACCAAAGCGGATCCATCAGGAGATTCTTCTTTCTTGGGCAAGTACATCCTTGGAGCCAAAAACAACTTCAAGGACTTTAACAATGAGAGACGAGCTCCTCCGTTACAGGAGACTGTGCGCCATTTAGAGCCAGCAGAAACCAACGAAGAACCAGAGGAGGAACGGAAAGAAGAGCAGAACGCTGAGGAACAAATAGACAACACTCTTCAGACAGGAAATGATGACGCCAATAAAATAGTCATAGAAATAGAGTCCAGTCCTGATGCTGAGAGTGGAAACGCAGCAGATAAGATGGAGAAAGCCAAAGAAGGAACTGATCTAAATGGAGATGTGGAGGAAAGTAACGGGGATGTGGTTGAAATCATAAGTGAGGGCTTCAAGTTTAATTTTGGACAGACGAACTTGGTGAGCTTCTTATCTAAGAGGATTGAAGAAAAGCTGGAGAAGACGGTCAAAGATAATGAGGAGGAATTAGATGGAGGAGAAACGGATGTAAGCGGAGATGTTGAGGAAAGTAATGAAGCGAGTGAAGATGCTGAAGTCGTCAGCGAGGAAAACAAATTTGAGCTGAATCAGACGAGCATGGTGAGCTTCTTAGCAAAGAGGTTCGAAGAAAAGCTGGGGGggaatttcaaagaaaatatggAGGAATTAAACACGGGAGGAACTAATAACGAAAACAACGGAGCGAGTGAAGATGTAAACGAGGACGCCGAAGTCGTCATTTATGGAATCAAGTTTGACCTGAATCAGACAAGCATGGTGAATTTCCTTACTAAGAGGATTGAAGAAAAGCTGGAGGAGAATTTCACAGAAAATATGGAGGAATTAAATGCAGGAGGAGCTGATGTTGAGGAAAGCAACGGAGCGAGTGAAAATGCGAACGAGGACGCCGAAGTCGTCATTTACGGAATCAAGTTTGACCTGAATCAGACAAGCATGGTGAATTTCCTTACTAAGAGGATTGAAGAAAAGCTGGACAGGACTTTCAGCTTCACTGAGAAACAGGCGTCATCTCCGACCGGCAGCAATATTTCTCAAGACACAGGTTTCGGTTCTCAAGAATTCAACCCTTCAGCTGGAAGCCCTTAACTGCTTACTTCACAATATTACAATTAAATCCGAATCTAATAATGACAAACTTCATATAGACGAAAGAtctaaaggcctgttcacaccaagCACACTAACTAGagttcaagagtttacacttagctta

Function

symbol description
trpc2b Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Predicted to be involved in metal ion transport; regulation of cytosolic calcium ion concentration; and single fertilization. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Is expressed in microvillous olfactory receptor neurons; olfactory epithelium; olfactory receptor cell; and olfactory rosette. Orthologous to human TRPC2 (transient receptor potential cation channel subfamily C member 2 (pseudogene)).

GO:

id name namespace
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0007338 single fertilization biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006828 manganese ion transport biological_process
GO:0034703 cation channel complex cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015279 store-operated calcium channel activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005262 calcium channel activity molecular_function
GO:0070679 inositol 1,4,5 trisphosphate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050712-3 Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Predicted to be involved in metal ion transport; regulation of cytosolic calcium ion concentration; and single fertilization. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Is expressed in microvillous olfactory receptor neurons; olfactory epithelium; olfactory receptor cell; and olfactory rosette. Orthologous to human TRPC2 (transient receptor potential cation channel subfamily C member 2 (pseudogene)).

Ensembl:

ensembl_id ENSDARG00000003344

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037754 True 3555 mRNA 0.48 13 30746348 30765533

Neighbor

gene id symbol gene type direction distance location
XLOC_019032 zgc:110224 coding upstream 3496 30721733 ~ 30742852 (+)
XLOC_019031 clcn5a coding upstream 49753 30662263 ~ 30696595 (+)
XLOC_019030 si:ch211-200p22.4 coding upstream 163262 30563115 ~ 30583086 (+)
XLOC_019029 rab38c coding upstream 185858 30549512 ~ 30560490 (+)
XLOC_019028 slc7a3a coding upstream 208937 30502002 ~ 30537411 (+)
XLOC_019034 slc6a7 coding downstream 28818 30794351 ~ 30830901 (+)
XLOC_019035 rhogb coding downstream 172157 30937690 ~ 30951909 (+)
XLOC_019036 st6gal1 coding downstream 384905 31150438 ~ 31184035 (+)
XLOC_019037 asl coding downstream 487515 31253048 ~ 31277336 (+)
XLOC_019038 TENM2 coding downstream 668718 31434251 ~ 32008843 (+)
XLOC_019021 NA non-coding upstream 560027 30184309 ~ 30186321 (+)
XLOC_019020 NA non-coding upstream 562794 30163899 ~ 30183554 (+)
XLOC_019017 NA non-coding upstream 718719 30022933 ~ 30027629 (+)
XLOC_019015 CU855895.2 non-coding upstream 759452 29986796 ~ 29986896 (+)
XLOC_019014 CR847571.3 non-coding upstream 1139898 29606327 ~ 29606450 (+)
XLOC_019039 NA non-coding downstream 969656 31735189 ~ 31737398 (+)
XLOC_019040 CABZ01006935.1 non-coding downstream 1265103 32030636 ~ 32030752 (+)
XLOC_019041 NA non-coding downstream 1279891 32045424 ~ 32070143 (+)
XLOC_019042 NA non-coding downstream 1312524 32078057 ~ 32099320 (+)
XLOC_019044 NA non-coding downstream 1641230 32406763 ~ 32411647 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_01790786_01803089 TRPC2A, TRPC2B coding CI01000006 null 1789199 ~ 1803089 (-)
bowfin (Amia calva) AMCG00016194 NA misc CM030122.1 CM030122.1 11766152 ~ 11781547 (-)