CI01000006_01790786_01803089 (TRPC2A, TRPC2B)


Basic Information

Item Value
gene id CI01000006_01790786_01803089
gene name TRPC2A, TRPC2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1789199 ~ 1803089 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_01790786_01803089.mRNA
CCAGAACAATGGCGCGAGATTGTGAACAAGAAGTTTCGCTTCCCTCCGGAGCTCCTCGGCGCCATCCGAGAGGGGAACATAAGCATGGTTTCTTCGTTGCTGAAGACAGGTGACGGTATCATCCGTCAGCTGGACGACTCTGAGGACAGGCAATGGAGAGAAGCGCTAAACTTGTCCATCCGACTGGGCAATGAGGACACCATGGACACCCTTCTCCAAGGGGTCAAGTTTGACTTCCGGCAGATTCACGAAGCTCTTCTGGTGGCCGTGGACACCAACCAGCCTCGTGTGGTCAAGCGCCTCCTGGACCGGCTGGATCTAGAGAAGGGAAACAAGATGGATGTGCGCTCTTTCTCTATGGCCATTTTTGACCACTCCATTGATGATTCCCAGTTTGCACCTGGAGTGACACCATTGACACTGGCCTGTCAGAAGGATCTGTATGAAATTGTAACAATGCTCAATCAGAAAGGTCACGAAATTCCTTGGCCTCATAAAATCTCATGCGCATGTCTGGAGTGCACGAATGGACGGCAATACGATTTGCTCAAGTTCTCGTTGTCCCGTATCAACACCTACCGAGGTATTGCCAGCCGTGCTTACCTGTCCATCACTGCAGAAGATGCCATGCTCAGTGCCTTCCGACTCAGTCGCGATCTCCGCAAACTGTCTAAGAAGGAACCTGAGTTTAAGCCTCAGTATCTTAGCCTCGAGCAGGTGTGCCAGGAGTTTGCTGTGGAGCTGCTTGGAATGTGCCGGAACCAAAGCGAGGTCACCACCATCCTGAACAGCTGTGGGAATCTGGATGAGGGCAGCGAGGACGAGCTGGACCAACAGGCATTTGAGGAGGGCATTCCAAACCTTGCTCGCTTGAGGCTTGCTGTCAACTACAATCAAAAACAAGTAGGACCCCAAGCTTTAACACCTCAGAACAAGAAAAAGCTGCATTTTTATTTATGCATGCATTTGGCTAACCATTGGCTTCTTGTTTGTACTGCAGTTTGTAGCCCACCCGATCTGCCAGCAGGTGCTCTCCTCCATCTGGTGTGGGAGCCTTTCAGGTTGGAGGGGCAGCAGAACGGCATGGAAGCTTCTGGTGTCTTTGGGAATCTTCTTGACCATGCCTATCCTTTGCCTTATCTACTGGATCGCACCAAAGTCAAAGCTTCATATATGTGGTTCCTGATCACGCTACTGGGGGAATCCATTGCTATGGAGGTGTATCGGGACAGCTTTGCCTCTCGTCAGCACACCATCCTGCACAGCTCCTTCCACATGGTCTGGGTGGTTGGTTTTTTCTGGTTCGAGTGTAAGGAGGTTTGGATTGAGGGCTTGAGGAGTTACTTCCTGGACTGGTGGAACTGTCTGGACGTGATGGTTCTTAGCATGTACCTGGCTTCATTTGCCCTGAGAGTGGTCATCATGCTCAAGGTCCACTTCCTCTGCCAGTTACCTGACAACCAGGATGAGTGTGTCTACTTCAACGACACTTTGCGTGATGAGTGGCATCAGGAGGATCCCCAGTTCATCGCTGAGGTGCTGTTTGCGGTGACCAGCATGCTGAGTTTCACTCGCTTGGCCTACATCCTGCCAGCACACGAGTCTCTAGGTACCCTGCAGATCTCCATTGGAAAGATGATTGACGACATGATGAGATTTATGTTCATTTTGGTGATCATTGGAACCGCCTTCCTGTGTGGCATCAACAATGTCTATGTCCCATTTATGATCTCCCCTAATCTTGGAAGATTAAATGAAACCTTCAGCTTCCTCTTCTGGACAATGTTTGGTATGGCCGACCAGACCTATGTGGACATGCCTGAGTTTGTTTTGGCTGAGTTTGTTGGCAGAATCCTTTATGGCATCTACACCCTGGTCATTGTCATTGTGCTTCTAAACATGCTCATTGCCATGATCACCAACTCTTTTCAGAAAATTGAGGATGATGCTGATGTAGAGTGGAAATTCGCCCGTTCAAAGCTCTACCTGAGTTACTTCAGAGAAGGACTGACTATGCCTGTCCCCTTCAACATCATCCCCTCTCCAAAGGCCTTTTTCTATCTTTTAAGAGGAATTGTCAGACGGATCTGCTGCTGCTGCTTCAACTGTAACTCTGCTCCAGACTATCCTCCACTCACGTCTATGGATGACATGGGCTCAGGGGAGAACAGGATTCCCTACAGACAGCAGGTCATTCGCGCTCTGGTTCAGCGCTATATCGAATCTGCCAGGAGAGAGTTTGAAGAGGCCAAGCGCAAAGACGTTGGGAACAGGATCACAGAGCTGAGCAAAGTGATCGGCCAGCTACATGCTGAAATGAAGCAGATTCACACGAACATGTTTGACTACTCAGACAACACCAAAGCAGACCCATCAGGAGGCTCTTCTTTCTTGGGAAAGTACATCCTCGGAGCCAAAAACAACTTCAAGGGCTTCAACAACAACGAGAGAAAGACTGCTCCATTTCATGAGCCAGTACACCATGAACAACCAGCGGAGACTGTAGAAGAGACTGTAAATGTGCAGGAGTCACAGACCACTGACACAGAGGCAGACAGGAAGTCAAATGAAGAGCAAAGCAGTGAGGGAGAAACAGATAACACTGTGGATGACATGAATGGGACAGAGGAGAGAGGAAAAGAGACAGGAATTAATGATGTCATTGAGATTAGCATGGAGGAGGGTGCTGAAAAGAATACAGAGAACACAAGTGAGACAGTCATAGATATAGAGTCCAATTCAGACATTGAGAGTGAAGCCAGTGGAAAAAGACAAGATGAGGTGATGACAGAGAAAGCTGAAGATAATAGAGAGGAATTGAATACAGATGAGCCGACAGGAGGATCAGCTCTAAATGAAGCAGAGACAGAGGAAAACGGAGAAGTTGAGGAAAATAATGGAACGATAGAAGATATAAATGAGGATGTAGTTGAAGTGGTCAGTGAGGGAAGTTCAAGTGAGGGCATTAAGTTTGATCTGAGTCAGACAAACCTAGTGAGTTTTTTAGCAAAGAGGATAGAGGAAAAGCTAGAGAAGAAAGTCCTAAAAGAGACGAATTTCACTTTCAGTGGAAACCAAGCAACATCTCCAACTGGCAGCGATGACTCCCAAGACACTGGTTTTGGTTCTCAAGAATTTGAACCCTCAACTAGTAGCCCTTAATGACAGCAATACATTTTTCCAAGATAAGTTCAAAACAACTTGCTTGTGAGAACCATAAACCTAGTTGAAAACATTTTTTTTTTAGTGTTTTAAGATAAAATGTGTTATGTTACAGTGGCCTCAGAAAGTATTTGGACACATTTGTCACACTGAAAATGTCTTAATGTTAGGTTTAAGGTTACATTTGAAAACAAATGATGCTGGTGTGTTTAGCTTTTCTCAAAAGTAACTTTTAGTGAACTCTGTTCACACAGGTTTAGTTCATCATATTATCTATAAACATGTTCCACTGAAATTTTATAGCCAGAAAGTGTCTGAATACTTTTAATTTAGAACAATATAGCTATTGTTTTATCATTTGAAAGTTTGTTTCACTTGTTCTGCAATGCTGTTCAAAAGTTCAGGGTCAGTAAGTGTTTTTTTTTTTGGAAAAAAATGTATACATTTAATCAGCAATGTATAATTAAATTGGTTGAAATTCAATTAAATTGATCAAAAGTGACAGTAAAACATTTGCATTGTTACACACACAAATATATTTACATATTCCAAATAAATGCTGTTCTTTTGACTTTCTGTCCATCAAAGAATACTGAAAAAAACTCCATAAAAATATTAAGCAGTAGCACAACTGTTTTCAACATTGATAATAAGAAACTTTTCTTGAGCAGCAAATCAGCATATTAGAATGATTTCTGAAGGATCATGTGACCCTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGCCATCACAGGAATCTTAATTCTTAATTAGAATCTTAATAAAGAATCTTAAAATATATTGAAATAGAAAACTGTTCTTTTAAATTGTAATATGTCACAAAAAATTTATTTTGAACAAATGCAATCTTGGTAAGTATAAGAGACTTCTTTTAAACCTTTAAAAACTCACACTGACCCTAACTTTTAAACAGTAATGCATTTTTAGCTGTGCCTTGTAAGGCAAAATACTTTTTTGGGGCCACTGTGAGATTTATATATATATATATATATATATATATATATATATACATATATATATCTCAGTGGCGTGTAGTCCATATAAGCTGCTCGGCAATTAATATTAACACTATAAATTACTTGTTTGAGGTGTACATGATAAAATGTTGGTAATGCGTATGTAATGCCGTAATTTTTATATATATATATATATATATACACACACACACTTGTATGTGGTTCACGGGGACTCTCCATAGACGTAATGGTTTTTATACTGTACAAACTGTATATTCTATCCCCCTACACTACCCCTACACCTACCCATCACAGGAAACTGCATTTTTTGAAATTCAAAAAAACATTGTTTAGTCTGTTTTTTAAGTCATTTAGTTTATGAGGACACAGGACGTGTCCTCATAAACCATGTTTATGTTGTAATACCCATGTCATTATACACATTTGTGTCCTCATAAACCATGTATACAAGAACACACACACACACACATGTACATACATACATTTTGAGAGAGGAATTCTGGTTGCTTGGTCTTTTGAAATTCTGAAATTTGTAAATCATGTAGATTTAATTATAGAACTCGTGTTTTGTCATTAAAATAAA

Function

symbol description
trpc2b Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Predicted to be involved in metal ion transport; regulation of cytosolic calcium ion concentration; and single fertilization. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Is expressed in microvillous olfactory receptor neurons; olfactory epithelium; olfactory receptor cell; and olfactory rosette. Orthologous to human TRPC2 (transient receptor potential cation channel subfamily C member 2 (pseudogene)).
trpc2a Predicted to enable calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in olfactory epithelium and olfactory receptor cell.

GO:

id name namespace
GO:0015279 store-operated calcium channel activity molecular_function

KEGG:

id description
K04965 TRPC2; transient receptor potential cation channel subfamily C member 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_01790786_01803089.mRNA True 4749 mRNA 0.42 11 1789199 1803089

Neighbor

gene id symbol gene type direction distance location
CI01000006_01741474_01759775 NA coding downstream 28096 1741014 ~ 1761103 (-)
CI01000006_01695152_01695781 RHOGB, RHOG, RHOG.S coding downstream 93418 1695145 ~ 1695781 (-)
CI01000006_01597661_01606545 ST6GAL1 coding downstream 182283 1597378 ~ 1606916 (-)
CI01000006_01531182_01543508 NA coding downstream 245691 1530981 ~ 1543508 (-)
CI01000006_01368608_01388697 NA coding downstream 400502 1368608 ~ 1388697 (-)
CI01000006_01806389_01811758 NA coding upstream 2363 1805452 ~ 1811758 (-)
CI01000006_01825754_01835213 CLCN5, CLCN5A coding upstream 21837 1824926 ~ 1835213 (-)
CI01000006_01864365_01882955 NA coding upstream 61276 1864365 ~ 1882955 (-)
CI01000006_01884281_01887304 RAB38C coding upstream 80742 1883831 ~ 1888374 (-)
CI01000006_01897638_01904724 SLC7A3A coding upstream 94427 1897516 ~ 1904770 (-)
G42692 NA non-coding downstream 565 1785501 ~ 1788634 (-)
G42693 NA non-coding downstream 5133 1783205 ~ 1784066 (-)
G42694 NA non-coding downstream 12061 1776685 ~ 1777138 (-)
G42691 NA non-coding downstream 27692 1761167 ~ 1761507 (-)
G42658 NA non-coding downstream 57872 1702230 ~ 1731327 (-)
G42714 NA non-coding upstream 37387 1840476 ~ 1840809 (-)
G42721 NA non-coding upstream 113199 1916288 ~ 1916496 (-)
G42739 NA non-coding upstream 166465 1969554 ~ 1969779 (-)
G42744 NA non-coding upstream 173598 1976687 ~ 1977230 (-)
G42759 NA non-coding upstream 237010 2040099 ~ 2095847 (-)
G42285 NA other downstream 1433060 355813 ~ 356139 (-)
G42667 NA other upstream 85899 1888988 ~ 1890756 (-)
CI01000006_02285649_02294759 NA other upstream 481743 2284994 ~ 2296494 (-)
G42934 NA other upstream 765824 2523776 ~ 2582206 (-)
CI01000006_02624725_02626124 COX8A other upstream 766685 2624436 ~ 2626776 (-)
G43102 NA other upstream 1105362 2908451 ~ 2933984 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019033 trpc2b coding NC_007132.7 CM002905.2 30746348 ~ 30765533 (+)
bowfin (Amia calva) AMCG00016194 NA misc CM030122.1 CM030122.1 11766152 ~ 11781547 (-)