CI01000006_01897638_01904724 (SLC7A3A)


Basic Information

Item Value
gene id CI01000006_01897638_01904724
gene name SLC7A3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1897516 ~ 1904770 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_01897638_01904724.mRNA
ACAATCAAGTACCTCACCAGATTTGTCAACTCATTTTGCATTAACCATGGTGGACAAAATGGTCTCTTTTGGACACGCGCTGCTGCGCCGTCGTGCTCTGGACTGCTCTGGGGAGGAAACACGGTTTGCTCGGTGTCTGTCCACTCTAGATCTGGTGGCGCTCGGGGTGGGCTCCACACTTGGAGCTGGAGTGTATGTTCTGGCTGGGGAGGTTGCGAGAGAGAAGGCGGGTCCTGCTATCGTCTTATGCTTCCTTGTGGCTGCACTTTCCTCCATGCTGGCTGGACTGTGCTATGCAGAATTCGGTGCACGAGTCCCTAAGACAGGGTCTGCTTACTTGTACAGCTATGTAACAGTAGGAGAAATCTGGGCCTTCATCACTGGTTGGAACCTCATCCTCTCTTATGTTATAGGTACAGCTAGTGTGGGGCGAGCTTGGAGCTCTACGTTCGATAACTTAATCGAGCAGAAGATCTCTAACTTCTTTAGGGCATCCATGGCTATGAAGGTTCCTGGGAAGGTTCTTGCAGAATATCCGGACCTATTTGCCCTCATTCTCATCCTGCTACTGACTGGACTGCTTGCTTTTGGTGTAAGTGAGTCTGCTCTGGTGAACAAGATCTTCACTGGGATCAACCTGATTGTGCTGGGCTTTGTCATCATTTCTGGCTTTGTCAAGGGCAACACAGCAAACTGGAACCTCACATATGAAGACTTTGTCAATGATACAAATATCACCGAACCAGAACGGGTAGAAAGCACATTTGGAAGTGGAGGTTTCGCTCCGTTCGGCTTCAGTGGCATCTTATCTGGCGCAGCCACCTGTTTCTACGCCTTTGTTGGCTTTGATTGCATTGCTACAACAAGTGAAGAAGCCAAGAACCCGATGCGTTCCATCCCCGTGGGCATTGTAGCCTCTCTGCTTATTTGCTTCTTTGCTTACTTCGGTGTGTCAGCTGCTCTTACGCTCATGATGCCCTATTACAAACTCAACACCCAGAGTCCCCTGCCCGAGGCCTTCAGTTACGTGGGCTGGGCACCGGCACGCTATATTGTAGCTGTGGGTTCACTCTGTGCCCTCTCGACAAGTTTGTTGGGCTCCATGTTCCCCATGCCTCGAGTGATATACGCTATGGCAGAGGACGGGCTGCTCTTCCGTTTCCTTTCCAGGATGAACAAGAGAACCAAAACTCCACTGCTGGCGACTGTTGTGTCTGGAATCGTGGCATCTCTCATGGCATTTCTGTTTGATTTGGCTGCATTGGTTGACCTCATGTCTATAGGGACATTGCTTGCATACTCTCTGGTCGCCGTGTGTGTCCTCATTCTCAGATATCAGCCAGGCAACCTGAGCTCTTCCAGTCAGACAGAGAAACTGGTGGAACTGGTCGGTGGCGAGAAAGTGGCCGTATGTGGAGACAGTGGAGATGAATATGGCATAGATCTGGATGACAATCCCCGCAAAGAGAAATTCTCTCTGAAACTCCTCCTGGTTCCTTCCAAGGACTCGCCAACAGAAATGTCGGGAACTATTGTCTATGGCACAACTGCTGTTATCTCTGTGCTGATCACCATACTGTGTGCGGTTTTGGCTCTGCGTCTGGAAGCCATCGTGAATCTCGAGATTGTGTGGGTGACGACGTGTGTCATTCTGGTCCTGCTGTGCATCCTGTGTGTCATTGTGATCTGTAGGCAGCCTGAGAGCAAGGAAGCTCTCACCTTCAAGCTGGACGCGGCCACCTGGTGCCGCTTCACTGTGTGGATGGGCATTGGTTTCGCAATCTACTTCGGCTATGGTATCCGGAACAGCACCGAGGCCATGAACAGCTCCCTCCGAAAATACGAGCCACCCCTTCAGAACAAAAGCCCCATATATCTAGGCGGTGAGGAGAGTGAAGTAGAGGGCATTTCTCCCTGATAGGAAGAGAGAACGACGGGCATATTGCCCTACATATTTTCGTTTTAAGTCTGCAGATTTGATGTGAAAATCACGGCTCATTTATTGAAGAGACTGCCCCAAACATCTCAATTGGGAAAAAA

Function

symbol description
slc7a3a Predicted to enable L-lysine transmembrane transporter activity; L-ornithine transmembrane transporter activity; and arginine transmembrane transporter activity. Acts upstream of or within fatty acid metabolic process and triglyceride metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in head. Used to study lipid storage disease and non-alcoholic fatty liver disease. Orthologous to human SLC7A3 (solute carrier family 7 member 3).

GO:

id name namespace
GO:0015297 antiporter activity molecular_function

KEGG:

id description
K13865 SLC7A3, ATRC3; solute carrier family 7 (cationic amino acid transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_01897638_01904724.mRNA True 2040 mRNA 0.50 11 1897516 1904770

Neighbor

gene id symbol gene type direction distance location
CI01000006_01884281_01887304 RAB38C coding downstream 9142 1883831 ~ 1888374 (-)
CI01000006_01864365_01882955 NA coding downstream 14561 1864365 ~ 1882955 (-)
CI01000006_01825754_01835213 CLCN5, CLCN5A coding downstream 62303 1824926 ~ 1835213 (-)
CI01000006_01806389_01811758 NA coding downstream 85758 1805452 ~ 1811758 (-)
CI01000006_01790786_01803089 TRPC2A, TRPC2B coding downstream 94427 1789199 ~ 1803089 (-)
CI01000006_01923864_01927117 SNX12.L, SNX12 coding upstream 18943 1923713 ~ 1927657 (-)
CI01000006_01990505_01991683 FOXI3A coding upstream 85287 1990057 ~ 1991779 (-)
CI01000006_02000378_02005713 NA coding upstream 95608 2000378 ~ 2006213 (-)
CI01000006_02018771_02022870 ZMAT2, ZMAT2.L coding upstream 113512 2018282 ~ 2022870 (-)
CI01000006_02054408_02058623 NA coding upstream 149638 2054408 ~ 2058773 (-)
G42714 NA non-coding downstream 56707 1840476 ~ 1840809 (-)
G42692 NA non-coding downstream 108882 1785501 ~ 1788634 (-)
G42693 NA non-coding downstream 113450 1783205 ~ 1784066 (-)
G42694 NA non-coding downstream 120378 1776685 ~ 1777138 (-)
G42691 NA non-coding downstream 136009 1761167 ~ 1761507 (-)
G42721 NA non-coding upstream 11518 1916288 ~ 1916496 (-)
G42739 NA non-coding upstream 64784 1969554 ~ 1969779 (-)
G42744 NA non-coding upstream 71917 1976687 ~ 1977230 (-)
G42759 NA non-coding upstream 135329 2040099 ~ 2095847 (-)
G42808 NA non-coding upstream 253322 2158092 ~ 2160200 (-)
G42667 NA other downstream 6760 1888988 ~ 1890756 (-)
G42285 NA other downstream 1541377 355813 ~ 356139 (-)
CI01000006_02285649_02294759 NA other upstream 380062 2284994 ~ 2296494 (-)
G42934 NA other upstream 664143 2523776 ~ 2582206 (-)
CI01000006_02624725_02626124 COX8A other upstream 665004 2624436 ~ 2626776 (-)
G43102 NA other upstream 1003681 2908451 ~ 2933984 (-)
G43549 NA other upstream 2447740 4352510 ~ 4355428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location