CI01000006_02018771_02022870 (ZMAT2, ZMAT2.L)


Basic Information

Item Value
gene id CI01000006_02018771_02022870
gene name ZMAT2, ZMAT2.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2018282 ~ 2022870 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_02018771_02022870.mRNA
ATGGCGTCTGGCAGTGGGTCTAAGAATGATTTTCGACGCAAGTGGGACAAAGATGAATATGAACAGCTGGCCCAGAAACGAATCACGGAAGAGAGAGAGAAAAAAGATGGCAAGCCTGTGCCCCCTGTCAAACGGGAGCTTCTCCGCCACAGAGATTATAAAGTGGATCTGGAGTCAAAACTGGGGAAGACTATCGTCATCACAAAGACCACACCACAGGCTGAGATGGGAGGGTACTACTGCAATGTCTGCGATTGTGTAGTAAAAGATTCCATAAACTTCTTAGATCATATTAATGGTAAAAAACATCAGAGAAACCTGGGGATGTCCATGCGAGTAGAGCGCTCTTCACTGGACCAAGTTAAAAAACGTTTTGAAGTGAACAAGAAAAAGCTGGAGGAAAAGCAGAAGGAGTATGATTTTGAGGAACGAATGAAGGAGTTGCGAGAGGAGCTCCGGCCGCCAGCCACAACAACAAAAACGAAAAAAATAAAAGTGAAGATGATGGAAGACGAGGTGCGGGAGAAATTAAGGTCGGGAATTTACATAATTAAAAGAAAAACAGGTCAGGCTGCAAAATCTAATGTTTGGGAACGGTTCTCAGAAATAATTGCAGCAGGAGACAACAGCAGTATCGGCTATGTGAAGTGCAACTCGTGTGAAAAAATTTACAAACACGAGAGCCACAAAACAGGCACTTCTAGCATGGCAAGACATATTTGTGGGGGGTCTAAGAAAAAGAACGACAGTGACACGTCTCATAATATTACTGCGAAATAGATTATACCCCGGTACAGTGGATGCCATTCTTTTTTTGCACAGCGAACGTAAAAACGCTAAATGAACATTTCTGTGCGTTAAATGTGTGGTAGATGCTGTGGGCTATTGTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCATTTTTCCTTTTAAAATTGGACCTGGAGTCTGTTAAGATTGATTGATTAAAAAAAGTTCAGATTAAAAAAGATTGATTAAAAAAGTTCAGCGGTTATCGCTGTAAACTGTCAGCCTCGTACAAATCTAAAAAAAATGTTTAGCCCATTAGATGAATAGGCTGCTTTCTAAATGTTGAAAATATTTACCATTATCTTGTTATTAATATGACCTGGTTTATGGTTCATATTCAATCGGATGTTGTTGCCAGTTTACAGGGCGATGTTTCCAAGCACTTTCAGGCTGAAATAAA

Function

symbol description
zmat2 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex. Orthologous to human ZMAT2 (zinc finger matrin-type 2).

GO:

id name namespace
GO:0046540 U4/U6 x U5 tri-snRNP complex cellular_component

KEGG:

id description
K12848 SNU23; U4/U6.U5 tri-snRNP component SNU23

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_02018771_02022870.mRNA True 1269 mRNA 0.41 6 2018282 2022870

Neighbor

gene id symbol gene type direction distance location
CI01000006_02000378_02005713 NA coding downstream 12069 2000378 ~ 2006213 (-)
CI01000006_01990505_01991683 FOXI3A coding downstream 26503 1990057 ~ 1991779 (-)
CI01000006_01923864_01927117 SNX12.L, SNX12 coding downstream 90625 1923713 ~ 1927657 (-)
CI01000006_01897638_01904724 SLC7A3A coding downstream 113512 1897516 ~ 1904770 (-)
CI01000006_01884281_01887304 RAB38C coding downstream 129908 1883831 ~ 1888374 (-)
CI01000006_02054408_02058623 NA coding upstream 31538 2054408 ~ 2058773 (-)
CI01000006_02061413_02070784 NA coding upstream 38372 2061242 ~ 2071405 (-)
CI01000006_02144479_02144813 NA coding upstream 121565 2144435 ~ 2144813 (-)
CI01000006_02148291_02155645 PWWP2A coding upstream 123993 2146863 ~ 2156367 (-)
CI01000006_02164837_02173343 CCNJ, CCNJL coding upstream 141172 2164042 ~ 2173343 (-)
G42744 NA non-coding downstream 41052 1976687 ~ 1977230 (-)
G42739 NA non-coding downstream 48503 1969554 ~ 1969779 (-)
G42721 NA non-coding downstream 101786 1916288 ~ 1916496 (-)
G42714 NA non-coding downstream 177473 1840476 ~ 1840809 (-)
G42692 NA non-coding downstream 229648 1785501 ~ 1788634 (-)
G42759 NA non-coding upstream 17229 2040099 ~ 2095847 (-)
G42808 NA non-coding upstream 135222 2158092 ~ 2160200 (-)
G42818 NA non-coding upstream 138397 2161267 ~ 2161749 (-)
CI01000006_02297635_02343401 PPP3CA, PPP3CB non-coding upstream 319681 2297082 ~ 2343401 (-)
G42868 NA non-coding upstream 348450 2371320 ~ 2371529 (-)
G42667 NA other downstream 127526 1888988 ~ 1890756 (-)
G42285 NA other downstream 1662143 355813 ~ 356139 (-)
CI01000006_02285649_02294759 NA other upstream 261962 2284994 ~ 2296494 (-)
G42934 NA other upstream 546043 2523776 ~ 2582206 (-)
CI01000006_02624725_02626124 COX8A other upstream 546904 2624436 ~ 2626776 (-)
G43102 NA other upstream 885581 2908451 ~ 2933984 (-)
G43549 NA other upstream 2329640 4352510 ~ 4355428 (-)

Expression


Co-expression Network