CI01000006_02624725_02626124 (COX8A)


Basic Information

Item Value
gene id CI01000006_02624725_02626124
gene name COX8A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2624436 ~ 2626776 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_02624725_02626124.mRNA
TGAAACATTAACCAATGTAAAAAGCATGAAAATTATAATATTAAGAGGTGTTCATCTTTTATGACACAAGTACGAAACAACTTAAAAATTTAATTAAAAAAATAAATAAATAAATAAAAATGAAAATTGCAGACTACTATTCAAAAATAAAATGGAGGCCACCACTGTGAGAGTCTACCATGGTTATTATGTGTCCAGTAGGCTTTCTTATTTCAAATTTGTCTTAGGCCCTTTGAATTTTGGTGACATGCTGCCTTAGTTCTTCATAATTTAACAGTAAATAATATATTCTCATAGTATGCACACAAGGATCTGTCAACTGGCATATGTTTTGCTAGGTTCATTAGTTCGTACAAAGCCAGGCGATTATGTAAGAAGTAAAAGAAGATTGTTCAGTGACCATTTAACTGTCAGTGTCACTGTTACATAACTACACAAATGTAATGAATAATCTTAATAATGTAAAACTATAGTGACGGTGCAAGACTGTTTATTTATAACAGTCTAAACTAAAAATGGGTTATGCACAAAAAAACTACAACTCCCACACGCATACGGATGTTTCCCATCAGCACTTGCTGCAGTGTTGCCGCACATTCCGGGGCCATCTTCCTCTTCCTGTTCATTACATACTCGATTTTAGAGCAGCAAGATGTCTGGATTTCTGCGGGGAATTGCTCGGATCCGCACCGCTCCGGCTCTGCGGGGATCAACCATCACCCAGCGAGCCAACATCGCTTCGCGACCTGCCAAGGATGCGCTGGGGCCCGCTGAGACAACAGCTGGTCTGGCCATATTTAGTCTTGCCATCCTGGGACCAGCTGGGTGGGTTCTGGCCAACCTGGAAAACTATAAAAAGAGGGACTCCGCTGCATCTGAGTGATCAATCTGTCATTGACTGAAAGCAGTTTGTCTGGTTTTATTGCTTTTAACACATTGGGACCACCATCACACAGACCTCCGACTTACCTGAACAGCAGAACGATTCCTCTCCTTTGAGCCACCCAGCTACCTCTCCATGCGACTGGTTACTTTCCTCCAAACACTCCGGTCTTCTTTACACCGAGCATCTGCTCCTTCTTACCAACTGTGTAATAATAACATATAATCATGGGTGTTTCTTATTACCTGGAGCTGTTACATTTGAAATAAA

Function

symbol description
cox8a Predicted to enable cytochrome-c oxidase activity. Predicted to be involved in oxidative phosphorylation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of respiratory chain complex IV. Predicted to be active in mitochondrion. Is expressed in brain; gill; heart; liver; and skeletal muscle. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to several human genes including COX8A (cytochrome c oxidase subunit 8A).

GO:

id name namespace
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02273 COX8; cytochrome c oxidase subunit 8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_02624725_02626124.mRNA False 1153 mRNA 0.41 2 2624455 2626776

Neighbor

gene id symbol gene type direction distance location
CI01000006_02617160_02621622 OTUB1, OTUB1A, OTUB1B coding downstream 2833 2617130 ~ 2621622 (-)
CI01000006_02516145_02524371 NA coding downstream 98646 2516129 ~ 2525809 (-)
CI01000006_02481958_02482821 PURA, PURAB, PURAA, PURA.L coding downstream 141327 2481395 ~ 2483128 (-)
CI01000006_02448953_02467739 NA coding downstream 156716 2447950 ~ 2467739 (-)
CI01000006_02297635_02343401 PPP3CA, PPP3CB coding downstream 281054 2297082 ~ 2343401 (-)
CI01000006_02634636_02643446 SLC22A6L coding upstream 7512 2634288 ~ 2643446 (-)
CI01000006_02648355_02660501 PYGMB, PYGM, PYGMA coding upstream 19632 2646408 ~ 2660801 (-)
CI01000006_02689895_02705309 NA coding upstream 62879 2689655 ~ 2708567 (-)
CI01000006_02720061_02749853 NA coding upstream 93191 2719967 ~ 2749874 (-)
CI01000006_02766733_02767600 NA coding upstream 139589 2766365 ~ 2768738 (-)
G42934 NA non-coding downstream 44311 2523776 ~ 2582206 (-)
G42913 NA non-coding downstream 137709 2486225 ~ 2486746 (-)
G42912 NA non-coding downstream 138341 2485899 ~ 2486114 (-)
G42910 NA non-coding downstream 139138 2485096 ~ 2485317 (-)
G42905 NA non-coding downstream 191872 2432033 ~ 2432583 (-)
G42987 NA non-coding upstream 43507 2670283 ~ 2671713 (-)
G42986 NA non-coding upstream 50946 2677722 ~ 2681500 (-)
G43005 NA non-coding upstream 82748 2709524 ~ 2710052 (-)
G43084 NA non-coding upstream 230192 2856968 ~ 2859398 (-)
CI01000006_02285649_02294759 NA other downstream 329457 2284994 ~ 2296494 (-)
G42667 NA other downstream 733699 1888988 ~ 1890756 (-)
G42692 NA other downstream 835821 1785501 ~ 1788634 (-)
G42285 NA other downstream 2268316 355813 ~ 356139 (-)
G43102 NA other upstream 281675 2908451 ~ 2933984 (-)
G43549 NA other upstream 1725734 4352510 ~ 4355428 (-)
CI01000006_04560607_04560993 NA other upstream 1932733 4559509 ~ 4562068 (-)
CI01000006_06974359_06976736 NA other upstream 4346448 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 4876369 7500246 ~ 7507976 (-)
G42890 NA non-coding downstream 153813 2415741 ~ 2415961 (-)

Expression


Co-expression Network