Gene
RNA
| Item | Value |
|---|---|
| gene id | G42986 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 2677722 ~ 2681500 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU48813 | True | 1120 | lncRNA | 0.40 | 2 | 2677722 | 2681500 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_02648355_02660501 | PYGMB, PYGM, PYGMA | coding | downstream | 16921 | 2646408 ~ 2660801 (-) |
| CI01000006_02634636_02643446 | SLC22A6L | coding | downstream | 34276 | 2634288 ~ 2643446 (-) |
| CI01000006_02624725_02626124 | COX8A | coding | downstream | 50946 | 2624436 ~ 2626776 (-) |
| CI01000006_02617160_02621622 | OTUB1, OTUB1A, OTUB1B | coding | downstream | 56100 | 2617130 ~ 2621622 (-) |
| CI01000006_02516145_02524371 | NA | coding | downstream | 151913 | 2516129 ~ 2525809 (-) |
| CI01000006_02689895_02705309 | NA | coding | upstream | 8155 | 2689655 ~ 2708567 (-) |
| CI01000006_02720061_02749853 | NA | coding | upstream | 38467 | 2719967 ~ 2749874 (-) |
| CI01000006_02766733_02767600 | NA | coding | upstream | 84865 | 2766365 ~ 2768738 (-) |
| CI01000006_03018948_03029493 | NA | coding | upstream | 336899 | 3018399 ~ 3031161 (-) |
| CI01000006_03043665_03066360 | NA | coding | upstream | 361738 | 3043238 ~ 3067159 (-) |
| G42987 | NA | non-coding | downstream | 6009 | 2670283 ~ 2671713 (-) |
| G42934 | NA | non-coding | downstream | 97578 | 2523776 ~ 2582206 (-) |
| G42913 | NA | non-coding | downstream | 190976 | 2486225 ~ 2486746 (-) |
| G42912 | NA | non-coding | downstream | 191608 | 2485899 ~ 2486114 (-) |
| G42910 | NA | non-coding | downstream | 192405 | 2485096 ~ 2485317 (-) |
| G43005 | NA | non-coding | upstream | 28024 | 2709524 ~ 2710052 (-) |
| G43084 | NA | non-coding | upstream | 175468 | 2856968 ~ 2859398 (-) |
| G43092 | NA | non-coding | upstream | 202325 | 2883825 ~ 2980614 (-) |
| G43262 | NA | non-coding | upstream | 431011 | 3112511 ~ 3116186 (-) |
| CI01000006_02285649_02294759 | NA | other | downstream | 382724 | 2284994 ~ 2296494 (-) |
| G42667 | NA | other | downstream | 786966 | 1888988 ~ 1890756 (-) |
| G42692 | NA | other | downstream | 889088 | 1785501 ~ 1788634 (-) |
| G43102 | NA | other | upstream | 226951 | 2908451 ~ 2933984 (-) |
| G43549 | NA | other | upstream | 1671010 | 4352510 ~ 4355428 (-) |
| CI01000006_04560607_04560993 | NA | other | upstream | 1878009 | 4559509 ~ 4562068 (-) |
| CI01000006_06974359_06976736 | NA | other | upstream | 4291724 | 6973224 ~ 6976872 (-) |
| CI01000006_07500281_07507754 | NA | other | upstream | 4821645 | 7500246 ~ 7507976 (-) |
