G42913


Basic Information

Item Value
gene id G42913
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2486225 ~ 2486746 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU48729
GGTCAGTATAACAACCACGGAATTAATGTTCGCAGTCGTGGGCAGATATCACAGACTGCTTGCGCAAACTCGTTAACTGTTTACAGTGCTGACAGACTGCGAGGCTGACAGACTCAAGTCTGTTGCGGCAAATCCAATGCCATTTAGTGTGACATACCGTTATGAGTTCAAGCTTACAGAGTTCACCTTCGACCAAAAACAAGCACACCTATGAGTAACGCTTATGAATTGGAGTCCCTCTTTCCTTCACTCACTGTCTTTTTTACGCACTGTCACTTTTGTTAGGCCCATGAAAACGAGTTTATACTTGCATTAGAAGTTTCAAATGACAGAAATGTTAAGTTTCAATTAAGGATAACGAGTTAAGCAGTACTTCATTCTAGTAAGCAACAGGCCACACAAAGTTACTTTTTTAATGGTTAGCCATGAGGTAATATCATTTTCGGTTACACTTGTCTTTGTTACATTAATTACACATTTAAGTGCTGAGTAATATTAAGTAACTACATGTACTTACTATAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU48729 True 522 lncRNA 0.31 1 2486225 2486746

Neighbor

gene id symbol gene type direction distance location
CI01000006_02481958_02482821 PURA, PURAB, PURAA, PURA.L coding downstream 3097 2481395 ~ 2483128 (-)
CI01000006_02448953_02467739 NA coding downstream 18486 2447950 ~ 2467739 (-)
CI01000006_02297635_02343401 PPP3CA, PPP3CB coding downstream 142824 2297082 ~ 2343401 (-)
CI01000006_02285649_02294759 NA coding downstream 189731 2284994 ~ 2296494 (-)
CI01000006_02262424_02271592 DNAJC18 coding downstream 214633 2261937 ~ 2271592 (-)
CI01000006_02516145_02524371 NA coding upstream 29383 2516129 ~ 2525809 (-)
CI01000006_02617160_02621622 OTUB1, OTUB1A, OTUB1B coding upstream 130384 2617130 ~ 2621622 (-)
CI01000006_02624725_02626124 COX8A coding upstream 137709 2624436 ~ 2626776 (-)
CI01000006_02634636_02643446 SLC22A6L coding upstream 147542 2634288 ~ 2643446 (-)
CI01000006_02648355_02660501 PYGMB, PYGM, PYGMA coding upstream 159662 2646408 ~ 2660801 (-)
G42912 NA non-coding downstream 111 2485899 ~ 2486114 (-)
G42910 NA non-coding downstream 908 2485096 ~ 2485317 (-)
G42905 NA non-coding downstream 53642 2432033 ~ 2432583 (-)
G42890 NA non-coding downstream 70264 2415741 ~ 2415961 (-)
G42868 NA non-coding downstream 114696 2371320 ~ 2371529 (-)
G42934 NA non-coding upstream 37030 2523776 ~ 2582206 (-)
G42987 NA non-coding upstream 183537 2670283 ~ 2671713 (-)
G42986 NA non-coding upstream 190976 2677722 ~ 2681500 (-)
CI01000006_02689895_02705309 NA non-coding upstream 203199 2689655 ~ 2708567 (-)
G43005 NA non-coding upstream 222778 2709524 ~ 2710052 (-)
G42667 NA other downstream 595469 1888988 ~ 1890756 (-)
G42692 NA other downstream 697591 1785501 ~ 1788634 (-)
G42285 NA other downstream 2130086 355813 ~ 356139 (-)
G43102 NA other upstream 421705 2908451 ~ 2933984 (-)
G43549 NA other upstream 1865764 4352510 ~ 4355428 (-)
CI01000006_04560607_04560993 NA other upstream 2072763 4559509 ~ 4562068 (-)

Expression


Co-expression Network