CI01000006_02262424_02271592 (DNAJC18)


Basic Information

Item Value
gene id CI01000006_02262424_02271592
gene name DNAJC18
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2261937 ~ 2271592 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_02262424_02271592.mRNA
ATGACAATGTTTGAGATGGATAAAGAGGAGTCTGACAGGCTGATAGAGAAAGCCAAGCTGTGCTTGCGGTCAGGACGCAAAGAGAAAGCCTTGCAGCTGCTGTACGAGGCGCAGAAGATCTACCCCAGCACCCGGGCCAGAGTACTGATTGATGCCATCGTGAAGAATGGCGGCACTCCCCCTGAAGAGGAGCGCACCTTCACGCCTCCACCTGGCTGGAGAAACTCTGAAGACGGCCCGGCTCCACATCAGCGGCCCAGTGTGCAGGAGAGAGCAGAGGGGTCCAGCGACGACAAGAAGAGCTACACGGAGGAGCAGCGGCAAGGAGTGCTCAGGATAAAGAGATGCAGAGACTTCTATGAAATTTTGGGGGTGCCAAAGAATGCCAGTGATGAGGACTTGAAGAAAGCCTATAGGAAGCTGGCGCTACGCTTCCACCCGGATAAGAACTGTGCCCCTGGAGCGACCGATGCTTTCAAAGCTATAGGCAATGCATATGCAGTGCTCAGTAACCCAGAGAAAAGGCAGCAATATGATGAGTGTGGGGATCAGGGCTCTGCAGAGACATCCAGTCATACTTCAGCCCAACCCCGTCATGCGTACGGACACCACCGCTCCTTCAGCAGAGACTTCGAGGCTGACATCTCCCCAGAGGAGCTCTTCAACATCTTCTTTGGGGGCAGATTTCCTACAGGCAACATCCATGTGTACACCAACCGAGGAGCTTCTTACGCCCATTATTACCAGCCCCGCAGACGCCGTGCATATGAGAGACGGGAGGAAGAGGTGGAGGAGAGCCACAGTCAGAACAACTTCACAGCTCTCCTGCAGCTGCTGCCGGTGCTGGTGCTCATTCTGATCTCTGTATTCACTCAGCTGATGGCCACCAACCCTCCCTACAGCCTCTTCTACAAACCGTCCATAGGGTTAGTGGTGTCCAGGGAAACCCAGCACATGGGTGTGCCATATTATGTGGAAAAGAGTTTTGAGAAGGAGTACCGTGGTGCTGCCCTGGACGAGCTGGAGAAGACCATTGAGAACGACTATATCGACCACCTACAGAACAGCTGCTGGAAAGAGAAGCAACAAAAATCTGATCTAGCTAACCTGGGCCAACTGTACCGAGACGAGCGGCTGAAGCAGAAGGCTGAGACCATGAAACTGGATCACTGTGACAAGCTGCACCGCTTCATGGGCCGACAGAGAGGAGAGTGAGGCATCGTCAGACAGCATGGTTAGCCTAATCAAAGAGCTTTTAGTATCAGTTACATATTTCAATTTACTTGGGTGGGTCACCTTTTTGGGAAGGAGAAAGGAAGGGAAAGACGTGTTACAGCAGTAGCCCAAGCTGATTTTCTCATGAGCGTTTGTGCCTTTCATCCGTTAATGGGGTGAAGTCTGAAGGCCTTTGGCTCAAGCATCTGATTCAGCTGCGACGCACAACCATGTGTGGAAGAGGGTAATTTGTGCGAGAGCCTGGCATTTTTTCCTTACATTAAGGAGCACCGGCTCCAGGCTGGCCGACAGGTTTTAAGCTAGTGATTGTTGTTTATTAGTCGCATTTAAGCATTATTGTTTATAGGAGTTTAACTTATTTAAATTAACATATTTAATTTCTTTTTCCTGAATTTGTGCTGTGAATTACATTTGACAATACAGTTATAACTTTTAATAGGACAAAAAGCTCAAACAGGGAAATAAA

Function

symbol description
dnajc18 Predicted to enable Hsp70 protein binding activity. Predicted to be involved in cellular response to misfolded protein; chaperone cofactor-dependent protein refolding; and ubiquitin-dependent ERAD pathway. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DNAJC18 (DnaJ heat shock protein family (Hsp40) member C18).

GO: NA

KEGG:

id description
K09538 DNAJC18; DnaJ homolog subfamily C member 18

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_02262424_02271592.mRNA True 1702 mRNA 0.50 8 2261937 2271592

Neighbor

gene id symbol gene type direction distance location
CI01000006_02233131_02238377 HNRNPH1, HNRH1, HNRNPH1L coding downstream 23424 2232914 ~ 2238513 (-)
CI01000006_02230950_02231194 NA coding downstream 30743 2230452 ~ 2231194 (-)
CI01000006_02227697_02229505 NA coding downstream 31650 2226933 ~ 2230287 (-)
CI01000006_02224923_02225933 PFDN1, PFD1 coding downstream 35813 2224923 ~ 2226124 (-)
CI01000006_02186968_02197039 SLC23A1 coding downstream 64898 2186909 ~ 2197039 (-)
CI01000006_02285649_02294759 NA coding upstream 13413 2284994 ~ 2296494 (-)
CI01000006_02297635_02343401 PPP3CA, PPP3CB coding upstream 25490 2297082 ~ 2343401 (-)
CI01000006_02448953_02467739 NA coding upstream 176358 2447950 ~ 2467739 (-)
CI01000006_02481958_02482821 PURA, PURAB, PURAA, PURA.L coding upstream 209803 2481395 ~ 2483128 (-)
CI01000006_02516145_02524371 NA coding upstream 244537 2516129 ~ 2525809 (-)
G42818 NA non-coding downstream 100188 2161267 ~ 2161749 (-)
G42808 NA non-coding downstream 101737 2158092 ~ 2160200 (-)
G42759 NA non-coding downstream 166090 2040099 ~ 2095847 (-)
G42744 NA non-coding downstream 284707 1976687 ~ 1977230 (-)
G42739 NA non-coding downstream 292158 1969554 ~ 1969779 (-)
G42868 NA non-coding upstream 99728 2371320 ~ 2371529 (-)
G42890 NA non-coding upstream 144149 2415741 ~ 2415961 (-)
G42905 NA non-coding upstream 160441 2432033 ~ 2432583 (-)
G42910 NA non-coding upstream 213504 2485096 ~ 2485317 (-)
G42667 NA other downstream 371181 1888988 ~ 1890756 (-)
G42692 NA other downstream 473303 1785501 ~ 1788634 (-)
G42285 NA other downstream 1905798 355813 ~ 356139 (-)
G42934 NA other upstream 297321 2523776 ~ 2582206 (-)
CI01000006_02624725_02626124 COX8A other upstream 298182 2624436 ~ 2626776 (-)
G43102 NA other upstream 636859 2908451 ~ 2933984 (-)
G43549 NA other upstream 2080918 4352510 ~ 4355428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019699 dnajc18 coding NC_007132.7 CM002905.2 30239549 ~ 30254185 (-)