XLOC_019699 (dnajc18)


Basic Information

Item Value
gene id XLOC_019699
gene name dnajc18
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 30239549 ~ 30254185 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038780
CTTCCGATTGGCTGTTTGGATTGTAGTCCCGCATCCTTCGCTTCTGCTTCCGGTTAGCAATGGAGGTTACAAGCAGTATTGCATTTCTGTCTTTCTCGCACATTTTGCAATGACGAAGCCAGGTCTGGTGTCTAGGATTAAACATGAATTGCTTTGATAATAAATTCATATTCGACTAGGTTGCGTCGTAGAGGTGTCCGTTTAGTGAGCGGAGGATGCTTAAAATCGGAATTTAAATTGTTGTGGTTGCATTAGCATAACGCACTCGATTTAGCTTCATGTCAACAACACCGCGAGTCATTTGTACCGTTAAATAAGCCTCGTTTTGATTATTTAGCTACTTTGAGCTCATCGGCACGATATTTAATGTGGGTTTGAGGTGTCATTGCTGAACATGTCAATGTTTGAGATGGACAGAGAGGAGTCTGACAGGCTGATAGAGAAAGCCAAGCTGTGTTTGCGCTCAGGACGCAAAGAGAAAGCCCTGCAGCTGTTGTACGAGGCGCAGAAGATCTACCCGAGCACCAGGGCCAGAGTGCTGATTGATGCCATTGTGAAGAATGGCTACACTCCCCCTGATGATGAGCGCACCTACACACCTCCCCCGGGCTGGAGAAGTGCTGATGAAGATGTCCCGCCTTCAGTTCCACATCACCGGCCCAGTACACATGAGAGAGCAGAGGCGTCCGCCGACGACAAGAAGAGCTACACGGAGGAGCAGCGACAAGGAGTTCTCAGGATAAAGAAATGCAGAGACTTCTATGAGATTCTTGGAGTGCCAAAGGGCGCCAGTGATGAGGACCTGAAGAAAGCTTATAGGAAGCTGGCACTTCGCTTTCACCCGGATAAGAACTGTGCTCCTGGAGCCACTGATGCTTTTAAAGCTATAGGCAATGCATATGCAGTGCTCAGTAACCCAGAGAAAAGGCAGCAGTATGATGAGTATGGAGACCAGGGCCCTGCCGAAACATCCAGTCAGCCTTCAGCCCAGCCGCGTCAAGCATACGCACGCCATCGCTCTTTCACCAGAGACTTTGAGCCTGACATCTCCCCCGAGGAGCTCTTCAACATTTTCTTCGGTGGCAGGTTTCCCACAGgcaaCATCCATGTGTACACTAATGGAGGAGCTTCTTATGCTCATTATTACCAGCCACGCAGACGCCGTCCATTTGAGAGACGAGAAGAGGAGGTGGAGGAGAGCCATAGTACTAACAACTTCACCCCTCTCCTGCAGCTGTTGCCGGTGCTGGTGCTCATTGTGATCTCTGTGTTCACTCAGCTGATGGCCACCAACCCTCCCTACAGCCTCTTCTACAAACCGTCCATGGGGTTAGTGGTGTCCAGGGAGACTCAGCACATGGGTGTGCCATACTACGTGGATAAGAGTTTTGAGAAGGAGTACCGTGGTGCTGCCCTGGACGAGCTGGAGAAAACCATAGAGACTGACTATATTGATCATCTACAGAGCAGCTGCTGGAAAGAGAAGCAACAGAaaTCTGATCTAGCTAACCTAGGCCAGCTTTATCGAGACGAACGGCTGAAGCAGAAGGCAGAGACCATGAAGCTGGATCACTGTGACAAACTGCACCGCTTCATCGGCCGGCAGAGAGGAGACTGAAGCTTCATCGTCCATCCAGACAGCATGGTCAGCCTAATCAAAGAGCTTTTAGTATCAGTTACGGTTATATATTTCAATTTACACGGGTGGGTCACCTTTTTGGGAAGGAGAAAGAAAGGAAATAGATGTGTTTCAGCCCAAGCTGACTTTGTCTTGAGCGTTTGTGCCTTTAATGAGTGCGTTGATGAGGTGAAGTCTGAAGGCCTTTAGCTCAAGCCTCTGATTCAGCTGCGATTGCACAAGCGTATGTGGAAGAAGGTAATTTTTGCACGAGCGCCTGGCATTTTTTTTCCTTATATTAAGGAGTACCGACTCCAGGCTGGCAGATGGGATTAAAGCTAGAGATTGTTGTTTATTAGTCGCAGTTAAGCTTTATTGTTCATAGGAATTTAACTTGTATAGCTcctatttaatttctttttcctGCATTTGAGCTGTGAATTACTTTTGACAAGACAATTATAACTTTTAAAAGGACGAAAGCtgaatttattagttttttcgGGTATTTAAACCACTACAGATTTTCAAAGTACTCTAGACGTAGCAGAAACCCCTTGTGCACCTTAGTGTTTTGCTCATTTGTTCTATTGCTGTATGTTTTGGACGTTAAATGGCGATTGttttaaatcaatgttttattttcatgaataTCAGCGCACTGACAGACATGTTGAATGCCATTACCTCTCTTATTTATTAACCgacagtgttttatttataatttggcaCTTTATTTGTCTTAACTTAATTGTGTGTTGCATGCTTCCATTCAAGCATTCTCCCTGCCTCGGCACAGTTATTATAACCAGGCAAATAACCGTTACTGAGCATCTGTTTTGAATGTTTTACCTCATGTCACTGAACACTATGTTCTGTATATAATAACATGCTGATCTTTAGCTCAAATCTGAAGAAGCGCTGAAGGAATTATCCTCATTCAGGATGGAGTAGTGGACGTGATGTGGAGAGTTTGTGCCAGTGGTATTGTTGGTGTTGTTTCCATCAGTTTGCAACTGATGGAAGTTTTGTTTGGATTGAGTGCGTTTTGTGCcgcttaaataaaacattaatcaaG

Function

symbol description
dnajc18 Predicted to enable Hsp70 protein binding activity. Predicted to be involved in cellular response to misfolded protein; chaperone cofactor-dependent protein refolding; and ubiquitin-dependent ERAD pathway. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DNAJC18 (DnaJ heat shock protein family (Hsp40) member C18).

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0071218 cellular response to misfolded protein biological_process
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0030544 Hsp70 protein binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-030131-8019 Predicted to enable Hsp70 protein binding activity. Predicted to be involved in cellular response to misfolded protein; chaperone cofactor-dependent protein refolding; and ubiquitin-dependent ERAD pathway. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DNAJC18 (DnaJ heat shock protein family (Hsp40) member C18).

Ensembl:

ensembl_id ENSDARG00000056005

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038780 True 2696 mRNA 0.45 8 30239549 30254185

Neighbor

gene id symbol gene type direction distance location
XLOC_019698 NA coding downstream 46881 30185865 ~ 30192668 (-)
XLOC_019697 hnrnph1l coding downstream 57785 30169610 ~ 30181764 (-)
XLOC_019696 hbegfb coding downstream 70600 30161295 ~ 30168949 (-)
XLOC_019694 pfdn1 coding downstream 79138 30116424 ~ 30160411 (-)
XLOC_019695 BX510945.1 coding downstream 106766 30132668 ~ 30132783 (-)
XLOC_019700 FAM53C coding upstream 2767 30256952 ~ 30284404 (-)
XLOC_019701 slbp2 coding upstream 34385 30288570 ~ 30293586 (-)
XLOC_019702 NA coding upstream 121515 30375700 ~ 30398344 (-)
XLOC_019703 NA coding upstream 147599 30401784 ~ 30409204 (-)
XLOC_019704 grpel2 coding upstream 156149 30410334 ~ 30415524 (-)
XLOC_019689 CU855895.1 non-coding downstream 236639 29998561 ~ 30002910 (-)
XLOC_019685 CR762480.2 non-coding downstream 259791 29733436 ~ 29979758 (-)
XLOC_019686 NA non-coding downstream 484999 29753220 ~ 29754550 (-)
XLOC_019707 NA non-coding upstream 322076 30576261 ~ 30583032 (-)
XLOC_019709 NA non-coding upstream 396880 30651065 ~ 30658560 (-)
XLOC_019712 NA non-coding upstream 538470 30792655 ~ 30794590 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_02262424_02271592 DNAJC18 coding CI01000006 null 2261937 ~ 2271592 (-)