XLOC_019698


Basic Information

Item Value
gene id XLOC_019698
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 30185865 ~ 30192668 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039663
TGCACATCACCTGGTGCTGTGGGGGCTGGTGCAATGGGGCACACTTTGGTGTGGGCAGGCGTGATGTGGCACACTGTAGTAGGGGTTGGCATGATGAGGCGCACTGTGGTGGAGGTGGGTGTGGTGGGTCACACCATGATAGGGGCTGGCACAATCTGGCAGACTGGTGGGGGCTGGCGCTATGGGGCATACCGTGGTGGGGCTGGTGGGAAGGAGCACACCGTGGTAGCGGCCGGCAGGAAGGAGCACACTGTGGTGGTGGCAGAAGCAGACTTTTGACCAGGTCGAAAAAGAGGAACCTGTGCTTCTTCATTCTGTAGAAAGATATACTTGTGTTTTGGGCCTGATGTTGATGGTGCCTTATCCAATTTTTCCCTAGGCAAAGGATGCTGCGTATCTGCCACAACAATTGGGTCAAGTGGAGTCAGTCCCGAACTGGATCACCGCTTCATCCATCAGCCTGCGACCGCCAAGCACCAGATCTCGGATGTGGTTGTAATCTGTCAGGATTTTAGACCACCTGGGGGTGCGAACACCAACCTTCTTGGTTGTGGACTTTTGTACGGCACACAGCTTTGTACAAATGGCCTCAACCAAGCAGCTGGTGCTGGGCCAATGTGCTGGACCTTCAGGGTGGCCAATCAGACAGCGCTTAACGCTCTCCACACTTGGAATGACCCCGGAGCGGTTCGGTGCCTTAAAGCACCCATGCGTCAGCTGAGGCTGGTAGTTGAAACGTTGTTTTCAACATCCAGGAGAGCTGTGCACAGCTGGATGGCCTCTGTCACCTGCACGTCAGTGAGGTTAGGAGCCTCATGGAAACCTACCAAGTAGCAAGATGCTGGACCTTGTCCCACCCAGCAATGCCATCAAGTCCTAtgtaaatgcagattataaaaatattgtaaatgtacTCCCTAGTAAATGCAGATTAAATTTAGTATATGTGGAATAAAACAGGACTAAATCAAATCAAGTTCTTAATGAGCCTCGACAGAGAGACTGTCTCCAGGGTCAAATGGCTGTGACGGCACTGAAGGGGCTGGGCTAGGATGCTGTCCTTCACCCTCAGCCAGTGATGATGGTGACTGGGGCAGAGGCAAAGATGAGGGGCTGTTTCTGAGATCACGACAGGGGTCATCCTCATACAGCACTGGAACTGTGATGTCCTCCATGCTGTGCTTCTCTAACCCTTCATCTTGTAGATCCTGGTCGTCTACTTGTCCACCAGCCTGTCTTCCTCCTCTGGGTTCTGGAGCACCGGAGTCAGGGTTTTGCCGGTCTGGCTGTAAAGGTACTCCATTCCCAGCAATTCAccttaaagaataaaacaataaaaacatatattaattaaacaaataatataataaacatttagatAAACATTTTGTGTAGTACATTAAAATCTCAATAAATAACtttcaaaataacaaattaatgaatttcTTGCCTGTATCTGCTCCAGGAGGGTGATAGCGGTCATCCCAGGGCTTCCCTTAGACTGCTCGGCTAAGCCTGTCCACAGCCTCTCTCATGGCACTGCCATATGACCGTATGGAGGATGCTCCTTTTATGGTGCTTTCCATCCAGTCATCATTCCAGCGCATCAAGCCCTCAAGGAGATAGgcctgaaaatgcacatcactgGCACTGGTCCCTGAaagttaaaacaattaaaaatgtaaaaaggattAAGTAACATGTTATTAGGTTATGTACTAACAttaaaattattgtcattttaaaacagaGTTACTTGTCAGGCAAGACAGCTTTGTCAATGCTGATAACATCACAAatgttatttaaagggcacctaggttaccccttttttcagatttaatataagtcttttgcg
>TCONS_00039251
CAAAAGTCTTAGTACACGGACAAATGCGATAGATTTCGCTTGCAATAGTGTTCACGGCTTTGTGACTGTGCATAATGTGGTATATTTGTCGCATATTGCATGTCAATCTAAATGTCACTCTGCGTGCTGGATTCGTACCCACGATCTGTGTGACAAAGTATACAATCACTGTCGTTTTCAGCGGAGCCATTCAGCTGCGCTCTTATTCAAATTCAACTGAGGTAACACCGGTAATTATAGTGCTATATTATTACGTGGATTCCTGAATCTGTGCAAGACATTTGGCTTAAATTGGTCAAAGGAGCCAAATGAGCGTCCCAGGGTGACCATGCTGTTCTCACAGAGATGCTGTCTGGAAAGCCGCGAATAATTCTTTATATTGAAAGAGAATGGTCTGCGTTTCATGGAAGATTTCAGCGGGAGGCCGTGAAAGGAGAAAAAAGCACGTGCAGATGGGAAGACGTCTTTTTTTGTCGGAGCCACAGAGCTTACAGGACAGGCAGAAATCATCCTGCATACATTAAGTGCTTTCAGGCAAAGGATGCTGCGTATCTGCCACAACAATTGGGTCAAGTGGAGTCAGTCCCGAACTGGATCACCGCTTCATCCATCAGCCTGCGACCGCCAAGCACCAGATCTCGGATGTGGTTGTAATCTGTCAGGATTTTAGACCACCTGGGGGTGCGAACACCAACCTTCTTGGTTGTGGACTTTTGTACGGCACACAGCTTTGTACAAATGGCCTCAACCAAGCAGCTGGTGCTGGGCCAATGTGCTGGACCTTCAGGGTGGCCAATCAGACAGCGCTTAACGCTCTCCACACTTGGAATGACCCCGGAGCGGTTCGGTGCCTTAAAGCACCCATGCGTCAGCTGAGGCTGGTAGTTGAAACGTTGTTTTCAACATCCAGGAGAGCTGTGCACAGCTGGATGGCCTCTGTCACCTGCACGTCAGTGAGGTTAGGAGCCTCATGGAAACCTACCAAGTAGCAAGATGCTGGACCTTGTCCCACCCAGCAATGCCATCAAGTCCTAtgtaaatgcagattataaaaatattgtaaatgtacTCCCTAGTAAATGCAGATTAAATTTAGTATATGTGGAATAAAACAGGACTAAATCAAATCAAGTTCTTAATGAGCCTCGACAGAGAGACTGTCTCCAGGGTCAAATGGCTGTGACGGCACTGAAGGGGCTGGGCTAGGATGCTGTCCTTCACCCTCAGCCAGTGATGATGGTGACTGGGGCAGAGGCAAAGATGAGGGGCTGTTTCTGAGATCACGACAGGGGTCATCCTCATACAGCACTGGAACTGTGATGTCCTCCATGCTGTGCTTCTCTAACCCTTCATCTTGTAGATCCTGGTCGTCTACTTGTCCACCAGCCTGTCTTCCTCCTCTGGGTTCTGGAGCACCGGAGTCAGGGTTTTGCCGGTCTGGCTGTAAAGGTACTCCATTCCCAGCAATTCAccttaaagaataaaacaataaaaacatatattaattaaacaaataatataataaacatttagatAAACATTTTGTGTAGTACATTAAAATCTCAATAAATAACtttcaaaataacaaattaatgaatttcTTGCCTGTATCTGCTCCAGGAGGGTGATAGCGGTCATCCCAGGGCTTCCCTTAGACTGCTCGGCTAAGCCTGTCCACAGCCTCTCTCATGGCACTGCCATATGACCGTATGGAGGATGCTCCTTTTATGGTGCTTTCCATCCAGTCATCATTCCAGCGCATCAAGCCCTCAAGGAGATAGgcctgaaaatgcacatcactgGCACTGGTCCCTGAaagttaaaacaattaaaaatgtaaaaaggattAAGTAACATGTTATTAGGTTATGTACTAACAttaaaattattgtcattttaaaacagaGTTACTTGTCAGGCAAGACAGCTTTGTCAATGCTGATAACATCACAAatgttatttaaagggcacctaggttaccccttttttcagatttaatataagtcttttgcg
>TCONS_00039664
GTGGGAAGCAAGCAAAGGGGCATGATCTTCTCGCTCACTCGCAAGCAAAAGTCTTAGTACACGGACAAATGCGATAGATTTCGCTTGCAATAGTGTTCACGGCTTTGTGACTGTGCATAATGTGGTATATTTGTCGCATATTGCATGTCAATCTAAATGTCACTCTGCGTGCTGGATTCGTACCCACGATCTGTGTGACAAAGTATACAATCACTGTCGTTTTCAGCGGAGCCATTCAGCTGCGCTCTTATTCAAATTCAACTGAGGTAACACCGGTAATTATAGTGCTATATTATTACGTGGATTCCTGAATCTGTGCAAGACATTTGGCTTAAATTGGTCAAAGGAGCCAAATGAGCGTCCCAGGGTGACCATGCTGTTCTCACAGAGATGCTGTCTGGAAAGCCGCGAATAATTCTTTATATTGAAAGAGAATGGTCTGCGTTTCATGGAAGATTTCAGCGGGAGGCCGTGAAAGGAGAAAAAAGCACGTGCAGATGGGAAGACGTCTTTTTTTGTCGGAGCCACAGAGCTTACAGGACAGGCAGAAATCATCCTGCATACATTAAGTGCTTTCAGgtgcaggtggagctgAAACTGCACTGGATGTTGGAGCACCAAATGATTGAATCACCACTGGCACactcatgtctgggttaaaaacaagtgtGCCAAACAATGACCCAGGCAAAGGATGCTGCGTATCTGCCACAACAATTGGGTCAAGTGGAGTCAGTCCCGAACTGGATCACCGCTTCATCCATCAGCCTGCGACCGCCAAGCACCAGATCTCGGATGTGGTTGTAATCTGTCAGGATTTTAGACCACCTGGGGGTGCGAACACCAACCTTCTTGGTTGTGGACTTTTGTACGGCACACAGCTTTGTACAAATGGCCTCAACCAAGCAGCTGGTGCTGGGCCAATGTGCTGGACCTTCAGGGTGGCCAATCAGACAGCGCTTAACGCTCTCCACACTTGGAATGACCCCGGAGCGGTTCGGTGCCTTAAAGCACCCATGCGTCAGCTGAGGCTGGTAGTTGAAACGTTGTTTTCAACATCCAGGAGAGCTGTGCACAGCTGGATGGCCTCTGTCACCTGCACGTCAGTGAGGTTAGGAGCCTCATGGAAACCTACCAAGTAGCAAGATGCTGGACCTTGTCCCACCCAGCAATGCCATCAAGTCCTAtgtaaatgcagattataaaaatattgtaaatgtacTCCCTAGTAAATGCAGATTAAATTTAGTATATGTGGAATAAAACAGGACTAAATCAAATCAAGTTCTTAATGAGCCTCGACAGAGAGACTGTCTCCAGGGTCAAATGGCTGTGACGGCACTGAAGGGGCTGGGCTAGGATGCTGTCCTTCACCCTCAGCCAGTGATGATGGTGACTGGGGCAGAGGCAAAGATGAGGGGCTGTTTCTGAGATCACGACAGGGGTCATCCTCATACAGCACTGGAACTGTGATGTCCTCCATGCTGTGCTTCTCTAACCCTTCATCTTGTAGATCCTGGTCGTCTACTTGTCCACCAGCCTGTCTTCCTCCTCTGGGTTCTGGAGCACCGGAGTCAGGGTTTTGCCGGTCTGGCTGTAAAGGTACTCCATTCCCAGCAATTCAccttaaagaataaaacaataaaaacatatattaattaaacaaataatataataaacatttagatAAACATTTTGTGTAGTACATTAAAATCTCAATAAATAACtttcaaaataacaaattaatgaatttcTTGCCTGTATCTGCTCCAGGAGGGTGATAGCGGTCATCCCAGGGCTTCCCTTAGACTGCTCGGCTAAGCCTGTCCACAGCCTCTCTCATGGCACTGCCATATGACCGTATGGAGGATGCTCCTTTTATGGTGCTTTCCATCCAGTCATCATTCCAGCGCATCAAGCCCTCAAGGAGATAGgcctgaaaatgcacatcactgGCACTGGTCCCTGAaagttaaaacaattaaaaatgtaaaaaggattAAGTAACATGTTATTAGGTTATGTACTAACAttaaaattattgtcattttaaaacagaGTTACTTGTCAGGCAAGACAGCTTTGTCAATGCTGATAACATCACAAatgttatttaaagggcacctaggttaccccttttttcagatttaatataagtcttttgcg

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0016073 snRNA metabolic process biological_process
GO:0016074 snoRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0001522 pseudouridine synthesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0007004 telomere maintenance via telomerase biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0000478 endonucleolytic cleavage involved in rRNA processing biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009451 RNA modification biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0006278 RNA-dependent DNA biosynthetic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031429 box H/ACA snoRNP complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0072588 box H/ACA RNP complex cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0034513 box H/ACA snoRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039663 False 1858 lncRNA 0.48 2 30185865 30187878
TCONS_00039251 False 2013 lncRNA 0.45 3 30185865 30192623
TCONS_00039664 True 2166 lncRNA 0.45 4 30185865 30192668

Neighbor

gene id symbol gene type direction distance location
XLOC_019697 hnrnph1l coding downstream 4101 30169610 ~ 30181764 (-)
XLOC_019696 hbegfb coding downstream 16916 30161295 ~ 30168949 (-)
XLOC_019694 pfdn1 coding downstream 25454 30116424 ~ 30160411 (-)
XLOC_019695 BX510945.1 coding downstream 53082 30132668 ~ 30132783 (-)
XLOC_019693 slc23a1 coding downstream 74731 30091417 ~ 30111134 (-)
XLOC_019699 dnajc18 coding upstream 46881 30239549 ~ 30254185 (-)
XLOC_019700 FAM53C coding upstream 64284 30256952 ~ 30284404 (-)
XLOC_019701 slbp2 coding upstream 95902 30288570 ~ 30293586 (-)
XLOC_019702 NA coding upstream 183032 30375700 ~ 30398344 (-)
XLOC_019703 NA coding upstream 209116 30401784 ~ 30409204 (-)
XLOC_019689 CU855895.1 non-coding downstream 182955 29998561 ~ 30002910 (-)
XLOC_019685 CR762480.2 non-coding downstream 206107 29733436 ~ 29979758 (-)
XLOC_019686 NA non-coding downstream 431315 29753220 ~ 29754550 (-)
XLOC_019678 NA non-coding downstream 890152 29294421 ~ 29295713 (-)
XLOC_019707 NA non-coding upstream 383593 30576261 ~ 30583032 (-)
XLOC_019709 NA non-coding upstream 458397 30651065 ~ 30658560 (-)
XLOC_019712 NA non-coding upstream 599987 30792655 ~ 30794590 (-)

Expression


Co-expression Network