XLOC_019685 (CR762480.2)


Basic Information

Item Value
gene id XLOC_019685
gene name CR762480.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 29733436 ~ 29979758 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038752
TAATAGCAGTTTATGTGTGATTTTATCATGTACTGTAGATCATATGATAAATGTTGTTTCTCCAGAACTGTACTGAGTGAGAAAACAACCGTCCTCAAGCCAAAATCTCCAGAGAAGACCAAACCCGATGAAAAAGACCCTGAGAAATCTCCTGCCAAAAATCTTGAAGGACGGGACCAGCAACCAGATCCTGTGGTCCCCACGAGccgctttattgagctgaagacaCTGCTCGTGAGCAATCTGCACCCAATGGTCACCGAACAACAGCTTATTGAAAAGTTTGGTGCATTGGGGTCCATCTCGACTGTGCAAGTGTGCAGAAACAACATCATCTCTCCTGCTTATGCCTTTGTGACTTTCCATCATCGACGTGATGCAGTGCGAGCACAAAAAGCTCTGAACTTCACTGATTTACTGAATAAACCTCTGATCATCATGTGGGGCCCAGACAAGACAATTGAGGTGCTCTCATATAATGACAGCAGCTCTCCAAGACaaacagaggagagagagacagctggagaaacagaggagagaaagaccagtgaagaaatagagagagaggccgctggagatacagaggagagaaagaccagtggagaaacagagagagaggctGCTGGTGAAACAAAGGAGAGAGCGAACAGCGAGTCTTCATGGGGAAGAAGGATCTCCAACAATGTGAAAAGTGCTATGAAAGCTGCGGTGAGCAGTCCAGCAGCCTGGGTCGGAGTCGGCATAGGTGTTTGTGCTGCTTATGCCTACTTCAGGAGCAGGAGCTAGTGTGGACACATTCTAAAAGACGAGAAGGCCTGCCTCACGATCTCCACTCATCATCCCCAGAGTGACCAATCACTGCTCCAGAAAGAACTTGATTTCCCCAGCAGGCCAAACACTTGcaataaatgtgaattgaataaactgtctTGTGTGTGTCTCATTCAGCATTAAAGCTCAGCCTTGTAATTTATATTCATCCAAGAGAAGCATAACAGCACTTTGTTCCAGACACAGAAGTAAACAATAGGATTTTCTTCACATCTATTGATGTGTTAGACAATAACTTATAGAACGTTTGAGAAGAAGGACTGCATCAAAGAACAATCAAATGTAGAATTGCAAATCAGGATTTCAATTATAATGTACAGTGGGTTCTAATAATGTCTGTACAGGAAGATATTCTAAAGAACGTCGGAAAAAAGCagctgttgacttccatagtatttttggtTCCTACTATTGTGGGTTTTTTTCggtaccactttattttgatggtccatttgagtattagtagactgtctgcttaatatctgctgattctgctccttcaacagacatttaactgactgtaagaaactttgcaagtgcatgtcaacttaccctaaccccaacccaacagtctaatgaaaattagttggcatgtactgtagatgcaatgtaacttaaattcaacaaactgaccatcaaaataaagtttggctgtttttcttttacaacattcttcaaaatatcttcttttgtgttcaacagaagaaagaaattcaaggtTTGAg
>TCONS_00038756
TGCATTCTCTAAGTGAACAATCAGATTCATTAAGAcattcctgctgactttagctcatATCTATATTTCTGTCCACAGGCGTGTCTCCCCCTCCTGGAGCAGTGCTGGTGTTGCACTCGTTGCTTCTTGAGTTTCCATTGTCGATGGCCTTCGCTGAACAGCTGCTAACCTACAGTGTAGGAGAAACCATAGAGCGCTCTGAGGATGAGCTGGACACGGTGCCCACTTCTGTGCTCATTCAGGTCGTGGAGCTGCTAGAACTGTACTGAGTGAGAAAACAACCGTCCTCAAGCCAAAATCTCCAGAGAAGACCAAACCCGATGAAAAAGACCCTGAGAAATCTCCTGCCAAAAATCTTGAAGGTCattaatattacttttctgaTTTCTGATTTTATGTGGAAATTATAAACACAAACCTCATATATGCTCATCTAAATGTAAAagatgttaaagggacagttaaatACTGAAAATTCCTCATCcgccacttgtttaaaacctgtttgagtttcttttttctgttcagtcagaattattagcccccctgtctattctttccccaatttctgtttaacagagagcagatttcttcaacacatttctaaacataatagttttaataactcatttctagtagctgatctattttatctttgccatgatgacagtaaataatatgtgactagatatttaactaggcaggtttgggtaattaggcaagttattgtataacgatggtttgttctgtagactatcaaaaaatatatagc
>TCONS_00038757
GCGTAGAAGATCCAAAAGAAGCTTTTCAAAAGGTGCGCCCCCCATTTGAGGGGGCAAACCGCATTTCTGTAACTGCATGGCTCGTCCGAGCccacgttttcttattttttcagcaaagtaaaactcagtttaaagttgcgaTCGTGTATCCTCCGACCTGCATTGCAAACTTCACGCATCAAGAAAGGACATCAAAGGACTCCGTACCCGAGTGCATCGGAAGAAACtcacaaaaagagagagacagaaaaatcCTAAAACTCCAGtTCCTCTCTGTTCAAAGCTCCATGGACTCGAGTGATGGTGTATGGATTCAGTCATAAAGTGCAGCGTAACGGCCAGCTGAACCTGATGGGGGCCGTGTGTTTCCCGCTGGACGCCTCTCCGTCCAACACCGGCCTCACTTCTCCACCCACAGCCAACCAGTATCCTAGCATCATTATCCCCACCGACAAAGTGCACGACAAATTGGGCGTGTCTCCCCCTCCTGGAGCAGTGCTGGTGTTGCACTCGTTGCTTCTTGAGTTTCCATTGTCGATGGCCTTCGCTGAACAGCTGCTAACCTACAGTGTAGGAGAAACCATAGAGCGCTCTGAGGATGAGCTGGACACGGTGCCCACTTCTGTGCTCATTCAGGTCGTGGAGCTGCTAGAACTGTACTGAGTGAGAAAACAACCGTCCTCAAGCCAAAATCTCCAGAGAAGACCAAACCCGATGAAAAAGACCCTGAGAAATCTCCTGCCAAAAATCTTGAAGGTCattaatattacttttctgaTTTCTGATTTTATGTGGAAATTATAAACACAAACCTCATATATGCTCATCTAAATGTAAAagatgttaaagggacagttaaatACTGAAAATTCCTCATCc
>TCONS_00038758
agggacacacacacacaaggctccCGACGCTGAAATGGACTCAGAAATCCTGAATCAGCCCATAAtTCCTCTCTGTTCAAAGCTCCATGGACTCGAGTGATGGTGTATGGATTCAGTCATAAAGTGCAGCGTAACGGCCAGCTGAACCTGATGGGGGCCGTGTGTTTCCCGCTGGACGCCTCTCCGTCCAACACCGGCCTCACTTCTCCACCCACAGCCAACCAGTATCCTAGCATCATTATCCCCACCGACAAAGTGCACGACAAATTGGGCGTGTCTCCCCCTCCTGGAGCAGTGCTGGTGTTGCACTCGTTGCTTCTTGAGTTTCCATTGTCGATGGCCTTCGCTGAACAGCTGCTAACCTACAGTGTAGGAGAAACCATAGAGCGCTCTGAGGATGAGCTGGACACGGTGCCCACTTCTGTGCTCATTCAGGTCGTGGAGCTGCTAGAACTGTACTGAGTGAGAAAACAACCGTCCTCAAGCCAAAATCTCCAGAGAAGACCAAACCCGATGAAAAAGACCCTGAGAAATCTCCTGCCAAAAATCTTGAAGGTCattaatattacttttctga
>TCONS_00038759
TCAGGGAAAAGCTCAGAGTGTCCACGAGTAGCTGAGCATGGCCATTAGCAGAGGTCTGCATCAGGGGAAGAACAGTCTGCTGGAGCTTACCAAACAGATCTGCTGCTTCCTGcagAGTGCGCCTGAGCAGTTTACGCTGGAGGAGATTCCCATCACCGAGTCAAAGGTCAGCATGGACGTCAACTTTTCCGGCTCGTCTCCTGCAAAGAGAGTCAACTCAAAGAtTCCTCTCTGTTCAAAGCTCCATGGACTCGAGTGATGGTGTATGGATTCAGTCATAAAGTGCAGCGTAACGGCCAGCTGAACCTGATGGGGGCCGTGTGTTTCCCGCTGGACGCCTCTCCGTCCAACACCGGCCTCACTTCTCCACCCACAGCCAACCAGTATCCTAGCATCATTATCCCCACCGACAAAGTGCACGACAAATTGGGCGTGTCTCCCCCTCCTGGAGCAGTGCTGGTGTTGCACTCGTTGCTTCTTGAGTTTCCATTGTCGATGGCCTTCGCTGAACAGCTGCTAACCTACAGTGTAGGAGAAACCATAGAGCGCTCTGAGGATGAGCTGGACACGGTGCCCACTTCTGTGCTCATTCAGGTCGTGGAGCTGCTAGAACTGTACTGAGTGAGAAAACAACCGTCCTCAAGCCAAAATCTCCAGAGAAGACCAAACCCGATGAAAAAGACCCTGAGAAATCTCCTGCCAAAAATCTTGAAG
>TCONS_00038760
ATCAGGGAAAAGCTCAGAGTGTCCACGAGTAGCTGAGCATGGCCATTAGCAGAGGTCTGCATCAGGGGAAGAACAGTCTGCTGGAGCTTACCAAACAGATCTGCTGCTTCCTGcagAGTGCACCTGAGCAGTTTACGCTGGAGAAGATTCCCATCACCGAGTCAAAAGTCAGCATGGACGTCAACTTTTCCTGCTCGTCTCCTGCAAAGAGAGTCAACTCAGCTGCCGCAAAGAAGTGCGCCTGAGCAGTTTACGCTGGAGGAGATTCCCATCACCGAGTCAAAGGTCAGCATGGACGTCAACTTTTCCGGCTCGTCTCCTGCAAAGAGAGTCAACTCAAAGAtTCCTCTCTGTTCAAAGCTCCATGGACTCGAGTGATGGT
>TCONS_00038761
CTAAAGTATGTACATGTTTGTGTATTTGGTGAAAATATgcttaacatgtttttttgctGAATACATCTTCTCTGTACTCCAGAGTGCGCCTGAGCAGTTTACGCTGGAGGAGATTCCCATCACCGAGTCAAAGGTCAGCATGGACGTCAACTTTTCCGGCTCGTCTCCTGCAAAGAGAGTCAACTCAAAGAtTCCTCTCTGTTCAAAGCTCCATGGACTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102728

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038752 False 1556 processed_transcript 0.42 3 29733436 29971309
TCONS_00038756 False 772 lncRNA 0.39 2 29970731 29974158
TCONS_00038757 False 879 lncRNA 0.47 4 29971018 29977059
TCONS_00038758 False 577 lncRNA 0.51 4 29971119 29977516
TCONS_00038759 False 714 lncRNA 0.53 5 29971141 29979757
TCONS_00038760 False 382 lncRNA 0.52 4 29975226 29979758
TCONS_00038761 True 220 lncRNA 0.44 2 29975236 29978027

Neighbor

gene id symbol gene type direction distance location
XLOC_019683 CR847571.1 coding downstream 44295 29687798 ~ 29689141 (-)
XLOC_019682 BX537120.2 coding downstream 199713 29508043 ~ 29533723 (-)
XLOC_019681 BX537120.1 coding downstream 255812 29452759 ~ 29477624 (-)
XLOC_019680 zgc:171310 coding downstream 316470 29416076 ~ 29416966 (-)
XLOC_019679 BX537120.3 coding downstream 369270 29325544 ~ 29364166 (-)
XLOC_019689 CU855895.1 coding upstream 18803 29998561 ~ 30002910 (-)
XLOC_019690 pwwp2a coding upstream 37599 30017357 ~ 30032706 (-)
XLOC_019691 CU855895.3 coding upstream 45273 30025031 ~ 30030644 (-)
XLOC_019692 ccnjl coding upstream 75014 30054772 ~ 30082521 (-)
XLOC_019693 slc23a1 coding upstream 111659 30091417 ~ 30111134 (-)
XLOC_019678 NA non-coding downstream 437723 29294421 ~ 29295713 (-)
XLOC_019673 CR759846.1 non-coding downstream 780450 28946015 ~ 28952986 (-)
XLOC_019671 BX511240.1 non-coding downstream 949492 28783827 ~ 28783944 (-)
XLOC_019670 NA non-coding downstream 1001765 28729172 ~ 28731671 (-)
XLOC_019668 NA non-coding downstream 1179523 28549749 ~ 28553913 (-)
XLOC_019695 BX510945.1 non-coding upstream 152910 30132668 ~ 30132783 (-)
XLOC_019698 NA non-coding upstream 206107 30185865 ~ 30192668 (-)
XLOC_019702 NA non-coding upstream 395942 30375700 ~ 30398344 (-)
XLOC_019703 NA non-coding upstream 422026 30401784 ~ 30409204 (-)

Expression


Co-expression Network