XLOC_019701 (slbp2)


Basic Information

Item Value
gene id XLOC_019701
gene name slbp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 30288570 ~ 30293586 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038784
CTGATAAAAAGCTTTGTCAAGCGCAATGTGTTGTGTGGCTGTACGTTAGCCAAAATCATGACAACACGCATAGAAAGCCTTCTTCAAAGCCCCTTTGAGTCGCGGTTAGGTCTGCCTCTTCACTTGTGGCCAACAGACGTTGCTCAAGACTTCAGTAGTAAAACCCTCTCTCTCCCATGTAGCCCAGAGCCTTGGCTGCTTCCTGGCTGCAGTTCAGTGTATGATAGTCTTGTCAGCTGCTCTAAAACCCCATTGTCTGCTTCACAAAATGGAGAAAAGCCTTCTGCTGTTCAGAAGCCTCGCagATCCTCCATCCTTGAGCGATGCATACTTAGGATGTCTACAGCTAGTGTAGCTGTTGGGACGGAAGATCTTGATGGGGTCAAGAGGTCACCATCAAGGGGAAAGTGGTATCCCCATAATGCTGACCCTTCTCATTTTGAGATCAATGAGGCTGTTTTGAAGCGTAGGCAAAAGCAGATTCAGTATGGGAAGAATACCTGTGGCTACCAGAACTACGTTCAGCAGGTTCCGAAGCGTCTGCGTGTCCCTGGAATTCATCCTTCCACTCCAAACAAATACCGCAAATATAGCCGCAGATCTTGGGACATGCAAGTCCGGCTTTGGAGGAGAGCACTTCATGCTTGGGACCTGCCATCTGCATCGCAAAATGATACTGAAGGACAAGACCCTGTTGATCAACTGCAGAGCTTGCTTGAGAAGATGAACACGGAGCTGAGCGACGGTGGTGAAAAAGAGGACATGAAGTGGGAAATGGCGCCAGATTCGATGACTTCTATCATTTCACAACCCTCTGAAATCTCAACTGATGGTCCTTGGTTGGCTTCTAATGCTTTGCAGATTGGAGCCTCATCCCACCTGAACCAAAGCTCTCAGCATGGACTGGGCTATACCTTCAGCAATCAACAGACAGCACAGGAAAACGTCCTGGGATGGTTGCGGTTTTTGCTTGAAACTGACCACAACCAAACCCAAGCACCTTTGCTGCCGGAAGAGCCTTTCTGGAGAATTGCGTAGTGTCATCAAATCATGTGAATTGTCTGCACGAATATGGCTCAAATCTTGTTCCCACAGCAGCCTTCGAGATTTTGAAGAATCGCACTTGGATCACTTGGTCTTCTAGTTCTGTATGTTGTGTACTTTATGTATTTCGAATTTGTGGTATCCTCTTCAGATGAATGTTATATTGTTCTCAATACTTTGTTCCTTCACTTTTTAGTTTCTATTATGTTTCTTCAAAAGCACGTTCctatttttaatttgttcattGTTCTTGACACTATTTCCCTCCTGTTTGTCACGTCACTGTTTTTCTAAAAACAGGAAGTTTTcaagttttatttactttttatttttgtgtggacCTCTATGAATGGAAAGCAAAACTAATAAAGATATGGACTGGC
>TCONS_00038785
GTGTGGCTGTACGTTAGCCAAAATCATGACAACACGCATAGAAAGCCTTCTTCAAAGCCCCTTTGAGTCGCGGTTGTATGTTTCAAAGCTTGTTTTGTGCCTTTAAAGTGTCCTCATGTGTTGTTGTCCTCATGTAGTATCGTAAAACACtttgtattttgttattttttgtgatttAGAGGTCTGCCTCTTCACTTGTGGCCAACAGACGTTGCTCAAGACTTCAGTAGTAAAACCCTCTCTCTCCCATGTAGCCCAGAGCCTTGGCTGCTTCCTGGCTGCAGTTCAGTGTATGATAGTCTTGTCAGCTGCTCTAAAACCCCATTGTCTGCTTCACAAAATGGAGAAAAGCCTTCTGCTGTTCAGAAGCCTCGCagATCCTCCATCCTTGAGCGATGCATACTTAGGATGTCTACAGCTAGTGTAGCTGTTGGGACGGAAGATCTTGATGGGGTCAAGAGGTCACCATCAAGGGGAAAGTGGTATCCCCATAATGCTGACCCTTCTCATTTTGAGATCAATGAGGCTGTTTTGAAGCGTAGGCAAAAGCAGATTCAGTATGGGAAGAATACCTGTGGCTACCAGAACTACGTTCAGCAGGTTCCGAAGCGTCTGCGTGTCCCTGGAATTCATCCTTCCACTCCAAACAAATACCGCAAATATAGCCGCAGATCTTGGGACATGCAAGTCCGGCTTTGGAGGAGAGCACTTCATGCTTGGGACCTGCCATCTGCATCGCAAAATGATACTGAAGGACAAGACCCTGTTGATCAACT
>TCONS_00038786
GCCGACTGTAAAAGTGTCATCATGCttgAGGTCTGCCTCTTCACTTGTGGCCAACAGACGTTGCTCAAGACTTCAGTAGTAAAACCCTCTCTCTCCCATGTAGCCCAGAGCCTTGGCTGCTTCCTGGCTGCAGTTCAGTGTATGATAGTCTTGTCAGCTGCTCTAAAACCCCATTGTCTGCTTCACAAAATGGAGAAAAGCCTTCTGCTGTTCAGAAGCCTCGCagATCCTCCATCCTTGAGCGATGCATACTTAGGATGTCTACAGCTAGTGTAGCTGTTGGGACGGAAGATCTTGATGGGGTCAAGAGGTCACCATCAAGGGGAAAGTGGTATCCCCATAATGCTGACCCTTCTCATTTTGAGATCAATGAGGCTGTTTTGAAGCGTAGGCAAAAGCAGATTCAGTATGGGAAGAATACCTGTGGCTACCAGAACTACGTTCAGCAGGTTCCGAAGCGTCTGCGTGTCCCTGGAATTCATCCTTCCACTCCAAACAAATACCGCAAATATAGCCGCAGATCTTGGGACATGCAAGTCCGGCTTTGGAGGAGAGCACTTCATGCTTGGGACCTGCCATCTGCATCGCAAAATGATACTGAAGGACAAGACCCTGTTGATCAACT

Function

symbol description
slbp2 Enables histone pre-mRNA stem-loop binding activity. Acts upstream of or within embryonic cleavage and oogenesis. Predicted to be part of histone pre-mRNA 3'end processing complex. Predicted to be active in cytoplasm. Is expressed in ovary and unfertilized egg.

GO:

id name namespace
GO:0006398 mRNA 3'-end processing by stem-loop binding and cleavage biological_process
GO:0051028 mRNA transport biological_process
GO:0005634 nucleus cellular_component
GO:0071204 histone pre-mRNA 3'end processing complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0071207 histone pre-mRNA stem-loop binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1722 Enables histone pre-mRNA stem-loop binding activity. Acts upstream of or within embryonic cleavage and oogenesis. Predicted to be part of histone pre-mRNA 3'end processing complex. Predicted to be active in cytoplasm. Is expressed in ovary and unfertilized egg.

Ensembl:

ensembl_id ENSDARG00000069428

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038784 False 1427 mRNA 0.45 8 30288570 30293224
TCONS_00038785 False 776 lncRNA 0.47 5 30291470 30293192
TCONS_00038786 True 625 processed_transcript 0.49 6 30291470 30293586

Neighbor

gene id symbol gene type direction distance location
XLOC_019700 FAM53C coding downstream 4166 30256952 ~ 30284404 (-)
XLOC_019699 dnajc18 coding downstream 34385 30239549 ~ 30254185 (-)
XLOC_019698 NA coding downstream 95902 30185865 ~ 30192668 (-)
XLOC_019697 hnrnph1l coding downstream 106806 30169610 ~ 30181764 (-)
XLOC_019696 hbegfb coding downstream 119621 30161295 ~ 30168949 (-)
XLOC_019702 NA coding upstream 82114 30375700 ~ 30398344 (-)
XLOC_019703 NA coding upstream 108198 30401784 ~ 30409204 (-)
XLOC_019704 grpel2 coding upstream 116748 30410334 ~ 30415524 (-)
XLOC_019705 afap1l1b coding upstream 124448 30418034 ~ 30467905 (-)
XLOC_019706 rab39ba coding upstream 246879 30540465 ~ 30545121 (-)
XLOC_019695 BX510945.1 non-coding downstream 155787 30132668 ~ 30132783 (-)
XLOC_019689 CU855895.1 non-coding downstream 285660 29998561 ~ 30002910 (-)
XLOC_019685 CR762480.2 non-coding downstream 308812 29733436 ~ 29979758 (-)
XLOC_019707 NA non-coding upstream 282675 30576261 ~ 30583032 (-)
XLOC_019709 NA non-coding upstream 357479 30651065 ~ 30658560 (-)
XLOC_019712 NA non-coding upstream 499069 30792655 ~ 30794590 (-)

Expression


Co-expression Network