XLOC_019697 (hnrnph1l)


Basic Information

Item Value
gene id XLOC_019697
gene name hnrnph1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 30169610 ~ 30181764 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038777
GTGATCATGAGTCTGCGCTGAATGAGAAGCAGAGAAACGTTCAAACGTGATCACGCCGAGAAGCGAAAATACTAATTATACCAAGctTGAAAACAGATTTATTGTGTTATCATGGCCGACGATGAAGGATTTGTCGTTCGTGTTCGGGGTCTGCCTTGGTCTTGCTCTGCAGAAGAAGTATCCAGGTTTTTTTCAGGCTGTAAAATTTCCAGCAATGGATCAGCCATCCACTTCACATACACACGAGAAGGCAGACCGAGTGGTGAAGCTTTTGTGGAGCTGGAGTCAGAGGACGACCTGAAGATCGCGGTCAAGAAAGAcagggagtcaatgggccatagATATGTAGAAGTTTTCAAATCAAACAATGTGGAAATGGACTGGGTTTTGAAGCACACTGGTCCGAACTGTCCAGAGACTGAGGGAGATGGACTGGTCAGACTGCGCGGCCTTCCTTTTGGATGTAGCAAGGAAGAGATTGTGCAGTTTTTTTCAGGGTTGGAAATCGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCTTCACAGGATATAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATTGAGATCTTTAAGAGCAGCAGAGCTGAAGTACGGACCCATTATGAGCCTCCGCGTAAAGGCATGGGCATGCAGAGACCTGGGCCTTATGACCGGCCCAGCGGAGGAGGACGGGGCTACAATGGCATGAGTCGTGGGGGATCCTTCGACCGGATGCGCCGTGGAGGATATGGTGGAGGAGTGTCAGATGGGCGTTACGGTGATGGTGGTAATTTCCAGAGTACCACAGGCCATTGTGTTCATATGAGGGGACTCCCTTACCGGGCCACAGAACCCGATATCTACAATTTTTTCTCACCTCTAAACCCGGTCCGTGTGCACATTGAGATCGGTCCAGATGGACGGGTGACCGGTGAGGCTGACGTTGAGTTTGCAACACATGAAGATGCAGTGGCTGCAATGTCAAAGGACAAGGCCAACATGCAACACCGATATGTTGAGTTGTTCCTAAACTCAACAGCAGGGGGCAGTAATGGGGGCTATGGAGGGCAGATGATGGGAGGAATGGGAAATCAGTCATCTTATGGGCACGGAGGACAACAGATGGGTGGAGGATACACTGGAGGATACAGCAGCCAGTCCAGCATGGGAGGCTACAATGACTACAATAGCCAGGGTGGGATGAGCAACAGCTATTACGGTGGCAGCCGTGGCTCGGTGGGCATGAATGGCATGGGAGGTGGCTGGGGCATGTAGATGCACCCGAAGGAGTATTCTTAAGTTTAGGGTCGTCTTGATTCTGCTGAGGCCGTCTGGGTTTTGTTCTCTGTCGCAACGATGAATATGGGGAGGATCCGATTCACACTTTGCCCACCTGTACTCTGAACCTCAGCGTTGGAATCAGTGTTATTTCCTGCATTTCCTAAGTTTAAGGGTCAGAAGGCCCCATTATTAATGCTTGTAAATATCCTCCAGACGTATCGATCACTTCAGAGACTGTAGCACATCGGCCTTGCATGGCATGAGGAGCTGCAACTCCACTTTTTATAATGCGCAAAGAACTTTGTCGAaaccttattttttaaaaagtgaactggaaaatgtttctttctttttcttgtcCAAGCTACTTCACGAatgcatattttaattttcattattgTAGACGCCACAGTTTCCCTCTTTTGGTCTGTCTTTGATTTCTCATATGTGTGGGTAATAAACATTCACAAAGGTATTGTCTCTAATTCA
>TCONS_00038778
aagctTGAAAACAGATTTATTGTGTTATCATGGCCGACGATGAAGGATTTGTCGTTCGTGTTCGGGGTCTGCCTTGGTCTTGCTCTGCAGAAGAAGTATCCAGGTTTTTTTCAGGCTGTAAAATTTCCAGCAATGGATCAGCCATCCACTTCACATACACACGAGAAGGCAGACCGAGTGGTGAAGCTTTTGTGGAGCTGGAGTCAGAGGACGACCTGAAGATCGCGGTCAAGAAAGAcagggagtcaatgggccatagATATGTAGAAGTTTTCAAATCAAACAATGTGGAAATGGACTGGGTTTTGAAGCACACTGGTCCGAACTGTCCAGAGACTGAGGGAGATGGACTGGTCAGACTGCGCGGCCTTCCTTTTGGATGTAGCAAGGAAGAGATTGTGCAGTTTTTTTCAGGGTTGGAAATCGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCTTCACAGGATATAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATTGAGATCTTTAAGAGCAGCAGAGCTGAAGTACGGACCCATTATGAGCCTCCGCGTAAAGGCATGGGCATGCAGAGACCTGGGCCTTATGACCGGCCCAGCGGAGGAGGACGGGGCTACAATGGCATGAGTCGTGGGGGATCCTTCGACCGGATGCGCCGTGGAGGATATGGTGGAGGAGTGTCAGATGGGCGTTACGGTGATGGTGGTAATTTCCAGAGTACCACAGGCCATTGTGTTCATATGAGGGGACTCCCTTACCGGGCCACAGAACCCGATATCTACAATTTTTTCTCACCTCTAAACCCGGTCCGTGTGCACATTGAGATCGGTCCAGATGGACGGGTGACCGGTGAGGCTGACGTTGAGTTTGCAACACATGAAGATGCAGTGGCTGCAATGTCAAAGGACAAGGCCAACATGCAACACCGATATGTTGAGTTGTTCCTAAACTCAACAGCAGGGGGCAGTAATGGGGGCTATGGAGGGCAGATGATGGGAGGAATGGGAAATCAGTCATCTTATGGGCACGGAGGACAACAGATGGGTGGAGGATACACTGGAGGATACAGCAGCCAGTCCAGCATGGGAGGCTACAATGACTACAATAGCCAGGGTGGGATGAGCAACAGCTATTACGGTGGCAGCCGTGGCTCGGTGGGCATGAATGGCATGGGAGGTGGCTGGGGCATGTAGAT
>TCONS_00038779
GACACGGAAGTGGGCGTGGACTCTCAGCGGAAGTGATCATGAGTCTGCGCTGAATGAGAAGCAGAGAAACGTTCAAACGTGATCACGCCGAGAAGCGAAAATACTAATTATACCAAGctTGAAAACAGATTTATTGTGTTATCATGGCCGACGATGAAGGATTTGTCGTTCGTGTTCGGGGTCTGCCTTGGTCTTGCTCTGCAGAAGAAGTATCCAGGTTTTTTTCAGGCTGTAAAATTTCCAGCAATGGATCAGCCATCCACTTCACATACACACGAGAAGGCAGACCGAGTGGTGAAGCTTTTGTGGAGCTGGAGTCAGAGGACGACCTGAAGATCGCGGTCAAGAAAGAcagggagtcaatgggccatagATATGTAGAAGTTTTCAAATCAAACAATGTGGAAATGGACTGGGTTTTGAAGCACACTGGTCCGAACTGTCCAGAGACTGAGGGAGATGGACTGGTCAGACTGCGCGGCCTTCCTTTTGGATGTAGCAAGGAAGAGATTGTGCAGTTTTTTTCAGGTATATTGAGATCTTTAAGAGCAGCAGAGCTGAAGTACGGACCCATTATGAGCCTCCGCGTAAAGGCATGGGCATGCAGAGACCTGGGCCTTATGACCGGCCCAGCGGAGGAGGACGGGGCTACAATGGCATGAGTCGTGGGGGATCCTTCGACCGGATGCGCCGTGGAGGATATGGTGGAGGAGTGTCAGATGGGCGTTACGGTGATGGTGGTAATTTCCAGAGTACCACAGGCCATTGTGT

Function

symbol description
hnrnph1l Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in Sjogren's syndrome and syndromic X-linked intellectual disability. Orthologous to several human genes including HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1) and HNRNPH2 (heterogeneous nuclear ribonucleoprotein H2).

GO:

id name namespace
GO:0043484 regulation of RNA splicing biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-275 Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in Sjogren's syndrome and syndromic X-linked intellectual disability. Orthologous to several human genes including HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1) and HNRNPH2 (heterogeneous nuclear ribonucleoprotein H2).

Ensembl:

ensembl_id ENSDARG00000005551

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038777 False 1830 mRNA 0.48 11 30169610 30181732
TCONS_00038778 False 1255 mRNA 0.51 10 30170103 30181268
TCONS_00038779 True 771 processed_transcript 0.50 6 30174216 30181764

Neighbor

gene id symbol gene type direction distance location
XLOC_019696 hbegfb coding downstream 661 30161295 ~ 30168949 (-)
XLOC_019694 pfdn1 coding downstream 9199 30116424 ~ 30160411 (-)
XLOC_019695 BX510945.1 coding downstream 36827 30132668 ~ 30132783 (-)
XLOC_019693 slc23a1 coding downstream 58476 30091417 ~ 30111134 (-)
XLOC_019692 ccnjl coding downstream 87089 30054772 ~ 30082521 (-)
XLOC_019698 NA coding upstream 4101 30185865 ~ 30192668 (-)
XLOC_019699 dnajc18 coding upstream 57785 30239549 ~ 30254185 (-)
XLOC_019700 FAM53C coding upstream 75188 30256952 ~ 30284404 (-)
XLOC_019701 slbp2 coding upstream 106806 30288570 ~ 30293586 (-)
XLOC_019702 NA coding upstream 193936 30375700 ~ 30398344 (-)
XLOC_019689 CU855895.1 non-coding downstream 166700 29998561 ~ 30002910 (-)
XLOC_019685 CR762480.2 non-coding downstream 189852 29733436 ~ 29979758 (-)
XLOC_019686 NA non-coding downstream 415060 29753220 ~ 29754550 (-)
XLOC_019678 NA non-coding downstream 873897 29294421 ~ 29295713 (-)
XLOC_019703 NA non-coding upstream 220020 30401784 ~ 30409204 (-)
XLOC_019707 NA non-coding upstream 394497 30576261 ~ 30583032 (-)
XLOC_019709 NA non-coding upstream 469301 30651065 ~ 30658560 (-)

Expression


Co-expression Network