RNA id: TCONS_00038777


Basic Information

Item Value
RNA id TCONS_00038777
length 1830
RNA type mRNA
GC content 0.48
exon number 11
gene id XLOC_019697
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 30169610 ~ 30181764 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGATCATGAGTCTGCGCTGAATGAGAAGCAGAGAAACGTTCAAACGTGATCACGCCGAGAAGCGAAAATACTAATTATACCAAGctTGAAAACAGATTTATTGTGTTATCATGGCCGACGATGAAGGATTTGTCGTTCGTGTTCGGGGTCTGCCTTGGTCTTGCTCTGCAGAAGAAGTATCCAGGTTTTTTTCAGGCTGTAAAATTTCCAGCAATGGATCAGCCATCCACTTCACATACACACGAGAAGGCAGACCGAGTGGTGAAGCTTTTGTGGAGCTGGAGTCAGAGGACGACCTGAAGATCGCGGTCAAGAAAGAcagggagtcaatgggccatagATATGTAGAAGTTTTCAAATCAAACAATGTGGAAATGGACTGGGTTTTGAAGCACACTGGTCCGAACTGTCCAGAGACTGAGGGAGATGGACTGGTCAGACTGCGCGGCCTTCCTTTTGGATGTAGCAAGGAAGAGATTGTGCAGTTTTTTTCAGGGTTGGAAATCGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCTTCACAGGATATAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATTGAGATCTTTAAGAGCAGCAGAGCTGAAGTACGGACCCATTATGAGCCTCCGCGTAAAGGCATGGGCATGCAGAGACCTGGGCCTTATGACCGGCCCAGCGGAGGAGGACGGGGCTACAATGGCATGAGTCGTGGGGGATCCTTCGACCGGATGCGCCGTGGAGGATATGGTGGAGGAGTGTCAGATGGGCGTTACGGTGATGGTGGTAATTTCCAGAGTACCACAGGCCATTGTGTTCATATGAGGGGACTCCCTTACCGGGCCACAGAACCCGATATCTACAATTTTTTCTCACCTCTAAACCCGGTCCGTGTGCACATTGAGATCGGTCCAGATGGACGGGTGACCGGTGAGGCTGACGTTGAGTTTGCAACACATGAAGATGCAGTGGCTGCAATGTCAAAGGACAAGGCCAACATGCAACACCGATATGTTGAGTTGTTCCTAAACTCAACAGCAGGGGGCAGTAATGGGGGCTATGGAGGGCAGATGATGGGAGGAATGGGAAATCAGTCATCTTATGGGCACGGAGGACAACAGATGGGTGGAGGATACACTGGAGGATACAGCAGCCAGTCCAGCATGGGAGGCTACAATGACTACAATAGCCAGGGTGGGATGAGCAACAGCTATTACGGTGGCAGCCGTGGCTCGGTGGGCATGAATGGCATGGGAGGTGGCTGGGGCATGTAGATGCACCCGAAGGAGTATTCTTAAGTTTAGGGTCGTCTTGATTCTGCTGAGGCCGTCTGGGTTTTGTTCTCTGTCGCAACGATGAATATGGGGAGGATCCGATTCACACTTTGCCCACCTGTACTCTGAACCTCAGCGTTGGAATCAGTGTTATTTCCTGCATTTCCTAAGTTTAAGGGTCAGAAGGCCCCATTATTAATGCTTGTAAATATCCTCCAGACGTATCGATCACTTCAGAGACTGTAGCACATCGGCCTTGCATGGCATGAGGAGCTGCAACTCCACTTTTTATAATGCGCAAAGAACTTTGTCGAaaccttattttttaaaaagtgaactggaaaatgtttctttctttttcttgtcCAAGCTACTTCACGAatgcatattttaattttcattattgTAGACGCCACAGTTTCCCTCTTTTGGTCTGTCTTTGATTTCTCATATGTGTGGGTAATAAACATTCACAAAGGTATTGTCTCTAATTCA

Function

GO:

id name namespace
GO:0043484 regulation of RNA splicing biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-275 Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in Sjogren's syndrome and syndromic X-linked intellectual disability. Orthologous to several human genes including HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1) and HNRNPH2 (heterogeneous nuclear ribonucleoprotein H2).

Ensembl:

ensembl_id ENSDART00000015636

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038763 lncRNA downstream 166700 29998561 ~ 30002910 (-) True XLOC_019689
TCONS_00038760 lncRNA downstream 189852 29975226 ~ 29979758 (-) False XLOC_019685
TCONS_00038759 lncRNA downstream 189853 29971141 ~ 29979757 (-) False XLOC_019685
TCONS_00038761 lncRNA downstream 191583 29975236 ~ 29978027 (-) True XLOC_019685
TCONS_00038758 lncRNA downstream 192094 29971119 ~ 29977516 (-) False XLOC_019685
TCONS_00039663 lncRNA upstream 4133 30185865 ~ 30187878 (-) False XLOC_019698
TCONS_00039251 lncRNA upstream 4133 30185865 ~ 30192623 (-) False XLOC_019698
TCONS_00039664 lncRNA upstream 4133 30185865 ~ 30192668 (-) True XLOC_019698
TCONS_00038785 lncRNA upstream 109738 30291470 ~ 30293192 (-) False XLOC_019701
TCONS_00039665 lncRNA upstream 193968 30375700 ~ 30398344 (-) True XLOC_019702
TCONS_00038775 mRNA downstream 661 30161298 ~ 30168949 (-) False XLOC_019696
TCONS_00038774 mRNA downstream 663 30161295 ~ 30168947 (-) False XLOC_019696
TCONS_00038776 mRNA downstream 3513 30161639 ~ 30166097 (-) True XLOC_019696
TCONS_00038772 mRNA downstream 9199 30116424 ~ 30160411 (-) True XLOC_019694
TCONS_00038770 mRNA downstream 58476 30091417 ~ 30111134 (-) False XLOC_019693
TCONS_00038780 mRNA upstream 57817 30239549 ~ 30254185 (-) True XLOC_019699
TCONS_00038782 mRNA upstream 75220 30256952 ~ 30273418 (-) False XLOC_019700
TCONS_00038781 mRNA upstream 75220 30256952 ~ 30273418 (-) False XLOC_019700
TCONS_00038783 mRNA upstream 78413 30260145 ~ 30284404 (-) True XLOC_019700
TCONS_00038784 mRNA upstream 106838 30288570 ~ 30293224 (-) False XLOC_019701
TCONS_00038773 other downstream 36827 30132668 ~ 30132783 (-) True XLOC_019695
TCONS_00038771 other downstream 64392 30098041 ~ 30105218 (-) True XLOC_019693
TCONS_00038752 other downstream 198301 29733436 ~ 29971309 (-) False XLOC_019685
TCONS_00038727 other downstream 1216624 28946015 ~ 28952986 (-) False XLOC_019673
TCONS_00038786 other upstream 109738 30291470 ~ 30293586 (-) True XLOC_019701
TCONS_00038787 other upstream 220052 30401784 ~ 30409204 (-) False XLOC_019703
TCONS_00038796 other upstream 422060 30603792 ~ 30607075 (-) False XLOC_019708
TCONS_00038799 other upstream 434080 30615812 ~ 30622470 (-) False XLOC_019708
TCONS_00038807 other upstream 704395 30886127 ~ 30888374 (-) True XLOC_019714

Expression Profile

//