RNA id: TCONS_00039251


Basic Information

Item Value
RNA id TCONS_00039251
length 2013
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id XLOC_019698
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 30185865 ~ 30192668 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAAGTCTTAGTACACGGACAAATGCGATAGATTTCGCTTGCAATAGTGTTCACGGCTTTGTGACTGTGCATAATGTGGTATATTTGTCGCATATTGCATGTCAATCTAAATGTCACTCTGCGTGCTGGATTCGTACCCACGATCTGTGTGACAAAGTATACAATCACTGTCGTTTTCAGCGGAGCCATTCAGCTGCGCTCTTATTCAAATTCAACTGAGGTAACACCGGTAATTATAGTGCTATATTATTACGTGGATTCCTGAATCTGTGCAAGACATTTGGCTTAAATTGGTCAAAGGAGCCAAATGAGCGTCCCAGGGTGACCATGCTGTTCTCACAGAGATGCTGTCTGGAAAGCCGCGAATAATTCTTTATATTGAAAGAGAATGGTCTGCGTTTCATGGAAGATTTCAGCGGGAGGCCGTGAAAGGAGAAAAAAGCACGTGCAGATGGGAAGACGTCTTTTTTTGTCGGAGCCACAGAGCTTACAGGACAGGCAGAAATCATCCTGCATACATTAAGTGCTTTCAGGCAAAGGATGCTGCGTATCTGCCACAACAATTGGGTCAAGTGGAGTCAGTCCCGAACTGGATCACCGCTTCATCCATCAGCCTGCGACCGCCAAGCACCAGATCTCGGATGTGGTTGTAATCTGTCAGGATTTTAGACCACCTGGGGGTGCGAACACCAACCTTCTTGGTTGTGGACTTTTGTACGGCACACAGCTTTGTACAAATGGCCTCAACCAAGCAGCTGGTGCTGGGCCAATGTGCTGGACCTTCAGGGTGGCCAATCAGACAGCGCTTAACGCTCTCCACACTTGGAATGACCCCGGAGCGGTTCGGTGCCTTAAAGCACCCATGCGTCAGCTGAGGCTGGTAGTTGAAACGTTGTTTTCAACATCCAGGAGAGCTGTGCACAGCTGGATGGCCTCTGTCACCTGCACGTCAGTGAGGTTAGGAGCCTCATGGAAACCTACCAAGTAGCAAGATGCTGGACCTTGTCCCACCCAGCAATGCCATCAAGTCCTAtgtaaatgcagattataaaaatattgtaaatgtacTCCCTAGTAAATGCAGATTAAATTTAGTATATGTGGAATAAAACAGGACTAAATCAAATCAAGTTCTTAATGAGCCTCGACAGAGAGACTGTCTCCAGGGTCAAATGGCTGTGACGGCACTGAAGGGGCTGGGCTAGGATGCTGTCCTTCACCCTCAGCCAGTGATGATGGTGACTGGGGCAGAGGCAAAGATGAGGGGCTGTTTCTGAGATCACGACAGGGGTCATCCTCATACAGCACTGGAACTGTGATGTCCTCCATGCTGTGCTTCTCTAACCCTTCATCTTGTAGATCCTGGTCGTCTACTTGTCCACCAGCCTGTCTTCCTCCTCTGGGTTCTGGAGCACCGGAGTCAGGGTTTTGCCGGTCTGGCTGTAAAGGTACTCCATTCCCAGCAATTCAccttaaagaataaaacaataaaaacatatattaattaaacaaataatataataaacatttagatAAACATTTTGTGTAGTACATTAAAATCTCAATAAATAACtttcaaaataacaaattaatgaatttcTTGCCTGTATCTGCTCCAGGAGGGTGATAGCGGTCATCCCAGGGCTTCCCTTAGACTGCTCGGCTAAGCCTGTCCACAGCCTCTCTCATGGCACTGCCATATGACCGTATGGAGGATGCTCCTTTTATGGTGCTTTCCATCCAGTCATCATTCCAGCGCATCAAGCCCTCAAGGAGATAGgcctgaaaatgcacatcactgGCACTGGTCCCTGAaagttaaaacaattaaaaatgtaaaaaggattAAGTAACATGTTATTAGGTTATGTACTAACAttaaaattattgtcattttaaaacagaGTTACTTGTCAGGCAAGACAGCTTTGTCAATGCTGATAACATCACAAatgttatttaaagggcacctaggttaccccttttttcagatttaatataagtcttttgcg

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0016073 snRNA metabolic process biological_process
GO:0016074 snoRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0001522 pseudouridine synthesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0007004 telomere maintenance via telomerase biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0000478 endonucleolytic cleavage involved in rRNA processing biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009451 RNA modification biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0006278 RNA-dependent DNA biosynthetic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031429 box H/ACA snoRNP complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0072588 box H/ACA RNP complex cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0034513 box H/ACA snoRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038763 lncRNA downstream 182955 29998561 ~ 30002910 (-) True XLOC_019689
TCONS_00038760 lncRNA downstream 206107 29975226 ~ 29979758 (-) False XLOC_019685
TCONS_00038759 lncRNA downstream 206108 29971141 ~ 29979757 (-) False XLOC_019685
TCONS_00038761 lncRNA downstream 207838 29975236 ~ 29978027 (-) True XLOC_019685
TCONS_00038758 lncRNA downstream 208349 29971119 ~ 29977516 (-) False XLOC_019685
TCONS_00038785 lncRNA upstream 98847 30291470 ~ 30293192 (-) False XLOC_019701
TCONS_00039665 lncRNA upstream 183077 30375700 ~ 30398344 (-) True XLOC_019702
TCONS_00038789 lncRNA upstream 209161 30401784 ~ 30408691 (-) False XLOC_019703
TCONS_00038791 lncRNA upstream 217771 30410394 ~ 30415461 (-) True XLOC_019704
TCONS_00039666 lncRNA upstream 383638 30576261 ~ 30582931 (-) False XLOC_019707
TCONS_00038777 mRNA downstream 4133 30169610 ~ 30181732 (-) False XLOC_019697
TCONS_00038778 mRNA downstream 4597 30170103 ~ 30181268 (-) False XLOC_019697
TCONS_00038775 mRNA downstream 16916 30161298 ~ 30168949 (-) False XLOC_019696
TCONS_00038774 mRNA downstream 16918 30161295 ~ 30168947 (-) False XLOC_019696
TCONS_00038776 mRNA downstream 19768 30161639 ~ 30166097 (-) True XLOC_019696
TCONS_00038780 mRNA upstream 46926 30239549 ~ 30254185 (-) True XLOC_019699
TCONS_00038782 mRNA upstream 64329 30256952 ~ 30273418 (-) False XLOC_019700
TCONS_00038781 mRNA upstream 64329 30256952 ~ 30273418 (-) False XLOC_019700
TCONS_00038783 mRNA upstream 67522 30260145 ~ 30284404 (-) True XLOC_019700
TCONS_00038784 mRNA upstream 95947 30288570 ~ 30293224 (-) False XLOC_019701
TCONS_00038779 other downstream 4101 30174216 ~ 30181764 (-) True XLOC_019697
TCONS_00038773 other downstream 53082 30132668 ~ 30132783 (-) True XLOC_019695
TCONS_00038771 other downstream 80647 30098041 ~ 30105218 (-) True XLOC_019693
TCONS_00038752 other downstream 214556 29733436 ~ 29971309 (-) False XLOC_019685
TCONS_00038729 other downstream 1233343 28950249 ~ 28952522 (-) False XLOC_019673
TCONS_00038786 other upstream 98847 30291470 ~ 30293586 (-) True XLOC_019701
TCONS_00038787 other upstream 209161 30401784 ~ 30409204 (-) False XLOC_019703
TCONS_00038796 other upstream 411169 30603792 ~ 30607075 (-) False XLOC_019708
TCONS_00038799 other upstream 423189 30615812 ~ 30622470 (-) False XLOC_019708
TCONS_00038807 other upstream 693504 30886127 ~ 30888374 (-) True XLOC_019714

Expression Profile

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