RNA id: TCONS_00039665


Basic Information

Item Value
RNA id TCONS_00039665
length 370
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id XLOC_019702
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 30375700 ~ 30398344 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGATTTTCTTGTTAGCTACAGGCGCTTGATGGTTTGGCATAGAAACTGTTACAATCAATTTAAGTGGATTTCAACAGAAAATGTTTGTATATCGAGAGTTCGACAATATCACTAACGTTTTGTGGCGGAAGCTAAAAGTCAGGGGggcctatgtgtgcacgtgcttGCTAAGAGTCAAACATCAAAAGGCGTCCTGAAGGAAACCCGTGGGACTGGTGCTGATCTATAGGGGTAGAGAGCTGGGATATAGGGGTCCGACAAGCGATCAACGAAAATGAGGCATGCCGGGGCAGGACATGTGGCACAGAGAGAGttcgtTGACATACCTGTCgaactaactggacaaactggtaacagtgggaaagcag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038785 lncRNA downstream 82508 30291470 ~ 30293192 (-) False XLOC_019701
TCONS_00039664 lncRNA downstream 183032 30185865 ~ 30192668 (-) True XLOC_019698
TCONS_00039251 lncRNA downstream 183077 30185865 ~ 30192623 (-) False XLOC_019698
TCONS_00039663 lncRNA downstream 187822 30185865 ~ 30187878 (-) False XLOC_019698
TCONS_00038763 lncRNA downstream 372790 29998561 ~ 30002910 (-) True XLOC_019689
TCONS_00038789 lncRNA upstream 3440 30401784 ~ 30408691 (-) False XLOC_019703
TCONS_00038791 lncRNA upstream 12050 30410394 ~ 30415461 (-) True XLOC_019704
TCONS_00039666 lncRNA upstream 177917 30576261 ~ 30582931 (-) False XLOC_019707
TCONS_00039667 lncRNA upstream 177917 30576261 ~ 30583032 (-) True XLOC_019707
TCONS_00038798 lncRNA upstream 213610 30611954 ~ 30614928 (-) False XLOC_019708
TCONS_00038784 mRNA downstream 82476 30288570 ~ 30293224 (-) False XLOC_019701
TCONS_00038783 mRNA downstream 91296 30260145 ~ 30284404 (-) True XLOC_019700
TCONS_00038782 mRNA downstream 102282 30256952 ~ 30273418 (-) False XLOC_019700
TCONS_00038781 mRNA downstream 102282 30256952 ~ 30273418 (-) False XLOC_019700
TCONS_00038780 mRNA downstream 121515 30239549 ~ 30254185 (-) True XLOC_019699
TCONS_00038788 mRNA upstream 3443 30401787 ~ 30408775 (-) True XLOC_019703
TCONS_00038790 mRNA upstream 11990 30410334 ~ 30415524 (-) False XLOC_019704
TCONS_00038792 mRNA upstream 19690 30418034 ~ 30467905 (-) False XLOC_019705
TCONS_00038793 mRNA upstream 19949 30418293 ~ 30467900 (-) True XLOC_019705
TCONS_00038794 mRNA upstream 142121 30540465 ~ 30545121 (-) True XLOC_019706
TCONS_00038786 other downstream 82114 30291470 ~ 30293586 (-) True XLOC_019701
TCONS_00038779 other downstream 193936 30174216 ~ 30181764 (-) True XLOC_019697
TCONS_00038773 other downstream 242917 30132668 ~ 30132783 (-) True XLOC_019695
TCONS_00038771 other downstream 270482 30098041 ~ 30105218 (-) True XLOC_019693
TCONS_00038752 other downstream 404391 29733436 ~ 29971309 (-) False XLOC_019685
TCONS_00038787 other upstream 3440 30401784 ~ 30409204 (-) False XLOC_019703
TCONS_00038796 other upstream 205448 30603792 ~ 30607075 (-) False XLOC_019708
TCONS_00038799 other upstream 217468 30615812 ~ 30622470 (-) False XLOC_019708
TCONS_00038807 other upstream 487783 30886127 ~ 30888374 (-) True XLOC_019714
TCONS_00038809 other upstream 575821 30974165 ~ 30994549 (-) True XLOC_019715

Expression Profile

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