CI01000006_02186968_02197039 (SLC23A1)


Basic Information

Item Value
gene id CI01000006_02186968_02197039
gene name SLC23A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2186909 ~ 2197039 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_02186968_02197039.mRNA
GTCTCACGTGGCCTCAAGGATACAGCAACACAGAGCCCCGCACATCCCCAGAGGGCCAATGAATCAGTCAGAACCTGCAGAGGAGTTTAAGCTCCCACCTTCAGATGGAGCTGTGCAAGCAGATAGTACAGAGCTACAGGAGATACCTGCTGACATGGCCAAGATGTCTGATGGGACTCCTAATCAGCCAGCAGGGTTTGATATGATCTACAGAATCGAGGACGTCCCGCCATGGTATCTGTGCGTGCTGCTGGGACTGCAGCACTACCTGACATGCTTCAGTGGAACTATTGCTGTACCATTCCTATTGGCTGAAGCCATGTGTGTGGGGGAGGACCAGTACACTGTCAGCCAGTTAGTGGGCACCATCTTCACCTGTGTGGGGATCACTACACTCATACAGACTACATTTGGTGTCAGGTTGCCTTTGTTCCAGGCGAGTGCTTTTGCCTTTCTCATCCCTGCTCAGGCAATTTTGAGGCTGGAAAGATGGAAATGTCCTCCTGAAGAGGAGATTTACGGAGATTGGTCTATTCCTCTCAACACGTCTCATATTTGGCACCCACGAATACGAGAGATTCAGGGCGCTATCATTGTGTCCAGCTTGATTGAGGTGGTCATAGGATTCGCTGGAATCCCTGGGATCCTGCTTAACTCAATCGGGCCCCTGACTGTCACCCCCACAGTGTCCCTTATCGGCTTGTCTGTCTTCCAGACGGCGGGAGACCGCGCAGGCAGCCACTGGGGCCTGTCTCTGCTGTGCATCTTTCTTATTGTTTTGTTCGCTCAGTATCTAAGGAACTGGGCTTGTCCTTTCCCAGCATATTCCAAACAAAAAGGCTGTCACGTCACACATGTGCAAATATTCAAGATGTTTCCCATCATCATGGCAATCATGGTGGTATGGCTGGTTTGCTATATTCTCACCCTGACGGATGTGCTGCCGAATGACCCAGAAAGGTACGGCTACAAGGCTCGCACTGACTCCCGGGGCGATATTATGACCCGTGCGCCGTGGTTTCGTTTCCCCTATCCATGTCAGTGGGGTTTACCGACAGTGACGTTAGCAGGAGTGCTAGGCATGTTTAGTGCCACTCTGGCTGGTATTGTTGAGTCTATCGGGGATTATTACGCCTGCGCTCGCCTCTCTGGAGCTCCACCTCCTCCTGTGCATGCTATCAATAGAGGGATCTTTACAGAGGGACTGTGCTGTATCATAGCGGGGCTGCTGGGCACAGGAAATGGATCAACCTCTTCCAGTCCTAACATAGGGGTGCTTGGCATTACAAAGGTGGGGAGTAGGAGGGTGATACAGTATGGAGCAGGAATAATGTTTTTATTGGGAACTATTGGGAAGTTCACCGCCCTGTTTGCCTCCTTACCTGACCCTGTCCTTGGAGGGATGTTCTGCACCTTGTTTGGTGTGGCAGAGCTGGACCAAATCATCACAGTGCTCCTGACAACAGAGATGTTTGTAGGGGGATTTCTAGCATTTGTACTTGATAACACAATCCCAGGCACCAGAAAAGAGCGAGGTCTGGTAGAATGGGCGTCTGAGAGTTCTTCAGGAGCAGGAACAGTAAAAACGGACACATATGACTTTCCAATTGGGATGGGGCTCATCCGGAGGCTGGGCTGCCTGCGCTACCTGCCAGTCTGTCCCACTTTCCAGGGTTTTAAGCCATCATGCCACAAATATGAGGAGGAGGACATAAAAATAAATGGAGGTGTGACTGATGCTCCAGTTGAAACAGTCTGCACCAAAATTTAGCTAGATTTTTTTGAACACTAACTTGCATCACAAACAAGTAAGAAAAATGCTCCATTAAA

Function

symbol description
slc23a1 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within L-ascorbic acid transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC23A1 (solute carrier family 23 member 1).

NR:

description
Slc23a1 protein, partial

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K14611 SLC23A1, SVCT1; solute carrier family 23 (nucleobase transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_02186968_02197039.mRNA True 1830 mRNA 0.50 13 2186909 2197039

Neighbor

gene id symbol gene type direction distance location
CI01000006_02164837_02173343 CCNJ, CCNJL coding downstream 13566 2164042 ~ 2173343 (-)
CI01000006_02148291_02155645 PWWP2A coding downstream 30542 2146863 ~ 2156367 (-)
CI01000006_02144479_02144813 NA coding downstream 42096 2144435 ~ 2144813 (-)
CI01000006_02061413_02070784 NA coding downstream 115504 2061242 ~ 2071405 (-)
CI01000006_02054408_02058623 NA coding downstream 128136 2054408 ~ 2058773 (-)
CI01000006_02224923_02225933 PFDN1, PFD1 coding upstream 27884 2224923 ~ 2226124 (-)
CI01000006_02227697_02229505 NA coding upstream 29894 2226933 ~ 2230287 (-)
CI01000006_02230950_02231194 NA coding upstream 33413 2230452 ~ 2231194 (-)
CI01000006_02233131_02238377 HNRNPH1, HNRH1, HNRNPH1L coding upstream 35875 2232914 ~ 2238513 (-)
CI01000006_02262424_02271592 DNAJC18 coding upstream 64898 2261937 ~ 2271592 (-)
G42818 NA non-coding downstream 25160 2161267 ~ 2161749 (-)
G42808 NA non-coding downstream 26709 2158092 ~ 2160200 (-)
G42759 NA non-coding downstream 91062 2040099 ~ 2095847 (-)
G42744 NA non-coding downstream 209679 1976687 ~ 1977230 (-)
G42739 NA non-coding downstream 217130 1969554 ~ 1969779 (-)
CI01000006_02297635_02343401 PPP3CA, PPP3CB non-coding upstream 145512 2297082 ~ 2343401 (-)
G42868 NA non-coding upstream 174281 2371320 ~ 2371529 (-)
G42890 NA non-coding upstream 218702 2415741 ~ 2415961 (-)
G42905 NA non-coding upstream 234994 2432033 ~ 2432583 (-)
G42910 NA non-coding upstream 288057 2485096 ~ 2485317 (-)
G42667 NA other downstream 296153 1888988 ~ 1890756 (-)
G42692 NA other downstream 398275 1785501 ~ 1788634 (-)
G42285 NA other downstream 1830770 355813 ~ 356139 (-)
CI01000006_02285649_02294759 NA other upstream 87793 2284994 ~ 2296494 (-)
G42934 NA other upstream 371874 2523776 ~ 2582206 (-)
CI01000006_02624725_02626124 COX8A other upstream 372735 2624436 ~ 2626776 (-)
G43102 NA other upstream 711412 2908451 ~ 2933984 (-)
G43549 NA other upstream 2155471 4352510 ~ 4355428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location