CI01000006_02233131_02238377 (HNRNPH1, HNRH1, HNRNPH1L)


Basic Information

Item Value
gene id CI01000006_02233131_02238377
gene name HNRNPH1, HNRH1, HNRNPH1L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2232914 ~ 2238513 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_02233131_02238377.mRNA
ATCCCAGTCACTGATTAGAGTGTTTTCTGAATATTTGTTTTCTTTATCAGTAATGATGGAGCATTGAACGTTTTTCTTGCCATTGTTTACCAATCTCTGTTTTTCTCTAGCTTGAAAGCAGATTCATTGTGTTATCATGGCTGATGATGAAGGATATGTCGTCCGTGTTCGAGGTTTACCTTGGTCGTGCTCTGTAGAAGAAGTTTCCAGGTTTTTCTCAGGCTGCAAAATTGCCAACAATGGAACAGCCATTCATTTCACATACACAAGAGAAGGTCGACCAAGTGGAGAAGCATTCGTGGAGCTGGAGTCAGAGGAAGACCTGAAAATTGCAGTCAAAAAAGACAGAGAGTCAATGGGGCATAGATATGTAGAAGTATTCAAATCAAACAACGTGGAAATGGACTGGGTTATGAAGCACACTGGTCCGAACTGTCCAGAAACTGAGGGAGACGGACTGGTCAGATTGCGCGGCCTTCCTTTTGGATGTAGCAAGGAAGAGATTGTGCAGTTTTTCTCAGGGTTGGAAATCGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCTTCACAGGATATAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATTGAGATCTTTAAGAGCAGCCGAGCTGAAGTGCGGACACATTATGAGCCCCCACGTAAAGGCATGGGCATGCAGAGACCTGGGCCTTACGACCGACCCAGTGGAGGAGGCCGGGGCTACAACGGCATGAGTCGTGGGGGATCTTTTGATCGGGTGCGACGTGGAGGATATAGTGGAGGTCATTGTGTTCATATGAGGGGACTCCCTTACCGGGCAACAGAACCTGACATCTACAATTTTTTCTCTCCTCTGAACCCGGTGCGTGTGCACATTGAGATTGGTCCAGATGGGCGGGTAACCGGTGAGGCCGATGTGGAATTTGCGACACATGAAGACGCAGTAGCTGCAATGTCAAAGGACAAAGCAAATATGCAACACCGTTATGTTGAGTTATTCTTAAACTCAACAGCAGGAGGCAGTAATGGGGGCTACGGGGGGCAGATGATGGGCGGAATGGACAACAGTAGCCAAGTTTCCATCCAGTTTTTGCAATGTTTTGTTATCAACAAAGCAAATATGCACAAAAGAAAAACCTTTTGCGAAATTTGCTGTCTCGAGGCTGTCTCCATCCAGTTTGCCTTTTACAGATAAAATGGTGTGCGTGATGTCATCCCTAAAAAAAAATGCTTTGTTGCATAAGTTTTGTTATATTGCTAAAAAAAATCTGCCCTTGAGCCCATTCCATACATAATTTTGCGTATATGGCAAATTTGTTTCTTTTGCATCCCAAATATTTGTAAAATGTACAGAGTAATGAGACAATTGAAATTCGCCAGTACTGCTTATTTTCACATATAATGTTATTAAA

Function

symbol description
hnrnph1l Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in Sjogren's syndrome and syndromic X-linked intellectual disability. Orthologous to several human genes including HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1) and HNRNPH2 (heterogeneous nuclear ribonucleoprotein H2).
hnrnph1 Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be located in viral nucleocapsid. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in Sjogren's syndrome and syndromic X-linked intellectual disability. Orthologous to several human genes including HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1).

GO:      GO:0030529, GO:0019013, GO:0019012, GO:0003676, GO:0000166

KEGG:

id description
K12898 HNRNPF_H; heterogeneous nuclear ribonucleoprotein F/H

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_02233131_02238377.mRNA True 1472 mRNA 0.44 9 2232914 2238513

Neighbor

gene id symbol gene type direction distance location
CI01000006_02230950_02231194 NA coding downstream 1720 2230452 ~ 2231194 (-)
CI01000006_02227697_02229505 NA coding downstream 2627 2226933 ~ 2230287 (-)
CI01000006_02224923_02225933 PFDN1, PFD1 coding downstream 6790 2224923 ~ 2226124 (-)
CI01000006_02186968_02197039 SLC23A1 coding downstream 35875 2186909 ~ 2197039 (-)
CI01000006_02164837_02173343 CCNJ, CCNJL coding downstream 59571 2164042 ~ 2173343 (-)
CI01000006_02262424_02271592 DNAJC18 coding upstream 23424 2261937 ~ 2271592 (-)
CI01000006_02285649_02294759 NA coding upstream 46492 2284994 ~ 2296494 (-)
CI01000006_02297635_02343401 PPP3CA, PPP3CB coding upstream 58569 2297082 ~ 2343401 (-)
CI01000006_02448953_02467739 NA coding upstream 209437 2447950 ~ 2467739 (-)
CI01000006_02481958_02482821 PURA, PURAB, PURAA, PURA.L coding upstream 242882 2481395 ~ 2483128 (-)
G42818 NA non-coding downstream 71165 2161267 ~ 2161749 (-)
G42808 NA non-coding downstream 72714 2158092 ~ 2160200 (-)
G42759 NA non-coding downstream 137067 2040099 ~ 2095847 (-)
G42744 NA non-coding downstream 255684 1976687 ~ 1977230 (-)
G42739 NA non-coding downstream 263135 1969554 ~ 1969779 (-)
G42868 NA non-coding upstream 132807 2371320 ~ 2371529 (-)
G42890 NA non-coding upstream 177228 2415741 ~ 2415961 (-)
G42905 NA non-coding upstream 193520 2432033 ~ 2432583 (-)
G42910 NA non-coding upstream 246583 2485096 ~ 2485317 (-)
G42667 NA other downstream 342158 1888988 ~ 1890756 (-)
G42692 NA other downstream 444280 1785501 ~ 1788634 (-)
G42285 NA other downstream 1876775 355813 ~ 356139 (-)
G42934 NA other upstream 330400 2523776 ~ 2582206 (-)
CI01000006_02624725_02626124 COX8A other upstream 331261 2624436 ~ 2626776 (-)
G43102 NA other upstream 669938 2908451 ~ 2933984 (-)
G43549 NA other upstream 2113997 4352510 ~ 4355428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011542 LOC105026271 coding CM030133.1 CM030133.1 30182402 ~ 30194886 (+)