CI01000006_02227697_02229505


Basic Information

Item Value
gene id CI01000006_02227697_02229505
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2226933 ~ 2230287 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_02227697_02229505.mRNA
ACAAGGTGGTGCCAGCGATCCCACTGCGGATAATGATTAAAATAATTTAAACGTAAGCATGCACACATTCTGTATTCTTAAATAATATATGCAAATCCATGTATTTAAATGTAATCAATTATTTTGGTCGTTTTAACTTGGCCTTTACACTTTTGTTTTAACCTCAGTTTTCCCTTAAAAAAATCATTGGCGTACAAATGTTAGAAAACTATACTTATAACATTGTGAAGCATCTTGACCAAATCTTTTACAAATATTACATTAGTTCCCAGCTGGAAAAATTCAGTTTAAGCACGTATAGCAGGTCCAAACTTGTGGACAATGACCAAACCACCTACGAGTTGGTCATCATAGTTTAAGTTTAATATGGTTTTTGGAACATGGTAGTAGGTCAACCATCTTCAACCTAGCAACTAGTTACCATAAAAATATATATATATATTTATTATTAACAAGACAATAAAACACCAGCGACACTACTAGCCCCTCAAATTATTGACGAATCAAATTATGAATCAATCTATCTCGATATTAGCTTTGGCTTCTTGTGCCGGTGATTGATTAGGTGTGGCCAGTGATTCATAAAATGGAAATGTGTGTCGGTCTGACGGTCTATATAACTGCACCGGCGCGCACACTTGTTCTCAGCTCACAGCACGAGACTTTTGACACAGTCCCCAGCACGCGCATTTGCGTGCAGATCGCCGACGGGGCTGGAGGCACGGTGGTACAGTGAGACAAACTTCTGATCTTCCAAAATCTGGGATTGTACTAAAAGGAATATGAATTCGTTATGGATTGTGATCTTTCTTTCCCATTGTCTCGTGTTACTCAAGGTGTGCAGTGGCGCCTCAGTGGACAGGTATGAGAGTGGTAAACCCAGAACAACAGTGGACAACCTCTTTCACACCCCAGAGAAAACAAACACAACAGGGCACCAGGTGCACAATGGGACGAATGTGTATGAATATGATGAAGAAGATGATTATGATGAAGAAGATGATTATCTCTCTGGGGATTATGACCTTAACGTACCAAGAGTGGCATTTTCAACCAAACCCAAACATCCGTCGGTGATGCCCACTACTGAGAAGGCGACAAAAAAAGGAAAAAGGAGGGGCAAAGGAAAAGGCAAGGGGAGAAAGAAGAACCCCTGCCTGGGGGAATACAAAGATTTCTGCATTCATGGAGTGTGTCAGTATCTAAAGGAGTTGCACACTCATTCTTGTGTTTGTCAAACAGGTTACTCAGGGGAGAGATGTCATTTATTCACCCTACCATCAGCTAAAGGGGAACAGCGTTACAGCCGGACCACAGCTCTAGCTGTCATAGCTGTGGTTCTGTCCCTCATGTGTCTCGCAATCATCGCTATTTTGCTGGCACTAAGGTACCACAAAAAAGATGACGCTGATGTAGAAAGTGAAGAAAAGGTCAAACTTGAGGCAATGTCAATACAGTAGTGATAAGGAAAGAAAGGTAAATAGTTGTCTATTTTTAATATTTTATATATATATATATATATATATATATATATATATATATATATAATTTTTAAATAATATTTATTAATGTTTTACAGGACGATGAAAGTCTAAACGACATGTGACCCATGGATGGATAGCATTATGGCTGAGGATCAGGGGCATATTTTTTACATTATTCCCAGTGGTAATCATTACTTTAAAAAAAAAAACAAAAAAAAAAAACAAAACCTTGCTCTCCTTTAAAAATTGATCCATGCCCCTGATGTCCTGCGATTATAGTGTCTGTCTGCACTGGCATGAAGGATGTTTTGAACACTGCTTCCATGTACAGTACAATGACTTTCTCATTGAATTCTCCACCTGGAGAACATACTGAGAGGACTGAACTGGATGAATGTATTTCGATTAAGTTGCTTTTTTGCTCATTGCTTATTTATTTATTTTAAAATAGGTGTTTCTGGTTTATCCCATCAGTCTGATTCTATAGTACTGTCAGAAACACCACAAAGCACTTGTAATTATTTATTTGTAATGTATTATTTATTTTGATATGTAACAATTTTGTGTACTGAATACACTGTAAGTTTGTAAATGTTTTTTATTGTATAGATATTTATTATTGATAGATACAATCAAATAATGTTCTAATAGGACTGAAGTTGCATCGCAGACTGTACAATCACATATGGAAGACTCTGCTATATGGTTTCAATAATATTATAGCTAAACTGTGAAATAAA

Function

NR:

description
Hbegf protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_02227697_02229505.mRNA True 2224 mRNA 0.37 5 2226933 2230287

Neighbor

gene id symbol gene type direction distance location
CI01000006_02224923_02225933 PFDN1, PFD1 coding downstream 809 2224923 ~ 2226124 (-)
CI01000006_02186968_02197039 SLC23A1 coding downstream 29894 2186909 ~ 2197039 (-)
CI01000006_02164837_02173343 CCNJ, CCNJL coding downstream 53590 2164042 ~ 2173343 (-)
CI01000006_02148291_02155645 PWWP2A coding downstream 70566 2146863 ~ 2156367 (-)
CI01000006_02144479_02144813 NA coding downstream 82120 2144435 ~ 2144813 (-)
CI01000006_02230950_02231194 NA coding upstream 165 2230452 ~ 2231194 (-)
CI01000006_02233131_02238377 HNRNPH1, HNRH1, HNRNPH1L coding upstream 2627 2232914 ~ 2238513 (-)
CI01000006_02262424_02271592 DNAJC18 coding upstream 31650 2261937 ~ 2271592 (-)
CI01000006_02285649_02294759 NA coding upstream 54718 2284994 ~ 2296494 (-)
CI01000006_02297635_02343401 PPP3CA, PPP3CB coding upstream 66795 2297082 ~ 2343401 (-)
G42818 NA non-coding downstream 65184 2161267 ~ 2161749 (-)
G42808 NA non-coding downstream 66733 2158092 ~ 2160200 (-)
G42759 NA non-coding downstream 131086 2040099 ~ 2095847 (-)
G42744 NA non-coding downstream 249703 1976687 ~ 1977230 (-)
G42739 NA non-coding downstream 257154 1969554 ~ 1969779 (-)
G42868 NA non-coding upstream 141033 2371320 ~ 2371529 (-)
G42890 NA non-coding upstream 185454 2415741 ~ 2415961 (-)
G42905 NA non-coding upstream 201746 2432033 ~ 2432583 (-)
G42910 NA non-coding upstream 254809 2485096 ~ 2485317 (-)
G42667 NA other downstream 336177 1888988 ~ 1890756 (-)
G42692 NA other downstream 438299 1785501 ~ 1788634 (-)
G42285 NA other downstream 1870794 355813 ~ 356139 (-)
G42934 NA other upstream 338626 2523776 ~ 2582206 (-)
CI01000006_02624725_02626124 COX8A other upstream 339487 2624436 ~ 2626776 (-)
G43102 NA other upstream 678164 2908451 ~ 2933984 (-)
G43549 NA other upstream 2122223 4352510 ~ 4355428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location