RNA id: CI01000006_02227697_02229505.mRNA


Basic Information

Item Value
RNA id CI01000006_02227697_02229505.mRNA
length 2224
RNA type mRNA
GC content 0.37
exon number 5
gene id CI01000006_02227697_02229505
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2226933 ~ 2230287 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAAGGTGGTGCCAGCGATCCCACTGCGGATAATGATTAAAATAATTTAAACGTAAGCATGCACACATTCTGTATTCTTAAATAATATATGCAAATCCATGTATTTAAATGTAATCAATTATTTTGGTCGTTTTAACTTGGCCTTTACACTTTTGTTTTAACCTCAGTTTTCCCTTAAAAAAATCATTGGCGTACAAATGTTAGAAAACTATACTTATAACATTGTGAAGCATCTTGACCAAATCTTTTACAAATATTACATTAGTTCCCAGCTGGAAAAATTCAGTTTAAGCACGTATAGCAGGTCCAAACTTGTGGACAATGACCAAACCACCTACGAGTTGGTCATCATAGTTTAAGTTTAATATGGTTTTTGGAACATGGTAGTAGGTCAACCATCTTCAACCTAGCAACTAGTTACCATAAAAATATATATATATATTTATTATTAACAAGACAATAAAACACCAGCGACACTACTAGCCCCTCAAATTATTGACGAATCAAATTATGAATCAATCTATCTCGATATTAGCTTTGGCTTCTTGTGCCGGTGATTGATTAGGTGTGGCCAGTGATTCATAAAATGGAAATGTGTGTCGGTCTGACGGTCTATATAACTGCACCGGCGCGCACACTTGTTCTCAGCTCACAGCACGAGACTTTTGACACAGTCCCCAGCACGCGCATTTGCGTGCAGATCGCCGACGGGGCTGGAGGCACGGTGGTACAGTGAGACAAACTTCTGATCTTCCAAAATCTGGGATTGTACTAAAAGGAATATGAATTCGTTATGGATTGTGATCTTTCTTTCCCATTGTCTCGTGTTACTCAAGGTGTGCAGTGGCGCCTCAGTGGACAGGTATGAGAGTGGTAAACCCAGAACAACAGTGGACAACCTCTTTCACACCCCAGAGAAAACAAACACAACAGGGCACCAGGTGCACAATGGGACGAATGTGTATGAATATGATGAAGAAGATGATTATGATGAAGAAGATGATTATCTCTCTGGGGATTATGACCTTAACGTACCAAGAGTGGCATTTTCAACCAAACCCAAACATCCGTCGGTGATGCCCACTACTGAGAAGGCGACAAAAAAAGGAAAAAGGAGGGGCAAAGGAAAAGGCAAGGGGAGAAAGAAGAACCCCTGCCTGGGGGAATACAAAGATTTCTGCATTCATGGAGTGTGTCAGTATCTAAAGGAGTTGCACACTCATTCTTGTGTTTGTCAAACAGGTTACTCAGGGGAGAGATGTCATTTATTCACCCTACCATCAGCTAAAGGGGAACAGCGTTACAGCCGGACCACAGCTCTAGCTGTCATAGCTGTGGTTCTGTCCCTCATGTGTCTCGCAATCATCGCTATTTTGCTGGCACTAAGGTACCACAAAAAAGATGACGCTGATGTAGAAAGTGAAGAAAAGGTCAAACTTGAGGCAATGTCAATACAGTAGTGATAAGGAAAGAAAGGTAAATAGTTGTCTATTTTTAATATTTTATATATATATATATATATATATATATATATATATATATATATAATTTTTAAATAATATTTATTAATGTTTTACAGGACGATGAAAGTCTAAACGACATGTGACCCATGGATGGATAGCATTATGGCTGAGGATCAGGGGCATATTTTTTACATTATTCCCAGTGGTAATCATTACTTTAAAAAAAAAAACAAAAAAAAAAAACAAAACCTTGCTCTCCTTTAAAAATTGATCCATGCCCCTGATGTCCTGCGATTATAGTGTCTGTCTGCACTGGCATGAAGGATGTTTTGAACACTGCTTCCATGTACAGTACAATGACTTTCTCATTGAATTCTCCACCTGGAGAACATACTGAGAGGACTGAACTGGATGAATGTATTTCGATTAAGTTGCTTTTTTGCTCATTGCTTATTTATTTATTTTAAAATAGGTGTTTCTGGTTTATCCCATCAGTCTGATTCTATAGTACTGTCAGAAACACCACAAAGCACTTGTAATTATTTATTTGTAATGTATTATTTATTTTGATATGTAACAATTTTGTGTACTGAATACACTGTAAGTTTGTAAATGTTTTTTATTGTATAGATATTTATTATTGATAGATACAATCAAATAATGTTCTAATAGGACTGAAGTTGCATCGCAGACTGTACAATCACATATGGAAGACTCTGCTATATGGTTTCAATAATATTATAGCTAAACTGTGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48617 lncRNA downstream 65184 2161267 ~ 2161749 (-) True G42818
TU48604 lncRNA downstream 66733 2158092 ~ 2160200 (-) False G42808
TU48605 lncRNA downstream 66733 2158573 ~ 2160200 (-) True G42808
TU48544 lncRNA downstream 131086 2040099 ~ 2095847 (-) True G42759
TU48535 lncRNA downstream 180071 2040099 ~ 2046862 (-) False G42759
TU48675 lncRNA upstream 112264 2343917 ~ 2354261 (-) True G42863
TU48680 lncRNA upstream 141033 2371320 ~ 2371529 (-) True G42868
TU48702 lncRNA upstream 185454 2415741 ~ 2415961 (-) True G42890
TU48721 lncRNA upstream 201746 2432033 ~ 2432583 (-) True G42905
TU48726 lncRNA upstream 254809 2485096 ~ 2485317 (-) True G42910
CI01000006_02224923_02225933.mRNA mRNA downstream 809 2224923 ~ 2226124 (-) True CI01000006_02224923_02225933
CI01000006_02186968_02197039.mRNA mRNA downstream 29894 2186909 ~ 2197039 (-) True CI01000006_02186968_02197039
CI01000006_02164837_02173343.mRNA mRNA downstream 53590 2164042 ~ 2173343 (-) True CI01000006_02164837_02173343
CI01000006_02148291_02155645.mRNA mRNA downstream 70566 2146863 ~ 2156367 (-) True CI01000006_02148291_02155645
CI01000006_02144479_02144813.mRNA mRNA downstream 82120 2144435 ~ 2144813 (-) True CI01000006_02144479_02144813
CI01000006_02230950_02231194.mRNA mRNA upstream 165 2230452 ~ 2231194 (-) True CI01000006_02230950_02231194
CI01000006_02233131_02238377.mRNA mRNA upstream 2627 2232914 ~ 2238513 (-) True CI01000006_02233131_02238377
CI01000006_02262424_02271592.mRNA mRNA upstream 31650 2261937 ~ 2271592 (-) True CI01000006_02262424_02271592
CI01000006_02285649_02294759.mRNA mRNA upstream 54718 2285005 ~ 2296494 (-) False CI01000006_02285649_02294759
CI01000006_02297635_02343401.mRNA mRNA upstream 66795 2297082 ~ 2343401 (-) False CI01000006_02297635_02343401
TU48426 other downstream 336177 1888988 ~ 1890756 (-) True G42667
TU48457 other downstream 438299 1785501 ~ 1788634 (-) True G42692
TU47983 other downstream 1870794 355813 ~ 356139 (-) True G42285
TU48637 other upstream 54545 2284832 ~ 2290690 (-) True G42837
TU48753 other upstream 338626 2568913 ~ 2582206 (-) True G42934
TU48776 other upstream 339487 2569774 ~ 2570203 (-) False G42952
TU48777 other upstream 339487 2569774 ~ 2570195 (-) False G42952
TU48778 other upstream 339487 2569774 ~ 2570192 (-) True G42952

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038774 False 1651 mRNA 0.41 6 NC_007132.7 30161295 ~ 30168947 (-)