G42759


Basic Information

Item Value
gene id G42759
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2040099 ~ 2095847 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU48535
AGAAATAATATGAACTTCTTCAAAAAATAAAGCTTTATGTAAAGGATATATCCTCCGATCTTCTTCTAGAATAAAAGTCTCCTCTCTGAAATCCTCCGAACAGCTTCAAAATCGCAAGATCAGCACAGAAAATATTCTGCCAAAGTCTCTGAATTCGCCTCGTCTCTCAATCAACATATAGCGATCGGTTCAAGTGTAAACATGTGCAGTCAGGATTCATAACACGCGTCGCTATAGCGACTAAAATTCGAATCACGCATTCGCACGCATGCACACCTGAAGTCGCGTGCATGAGCAGAGAAATCTGAACACATTATTGAATAGTTACAAACTTCATTTTGACGTTTCTTTAATACATATGCTAGTTACCATTTTTGTAAGATTTATATTCTAATCGCTGAACACAGACACACTTTTGGCAGAATTCTAATGTCCTTGCGTTAATTATCCTGAGGGTGGCGCTCTAATGATGATTGACAGACTTTAGTAAACGGAATTGTGTTGCTGTTGAAGTCTGTTTAATAAATAAATAAAACGATAAACGCGTAGAATGTCATCTTAGAATTGCTTAATGTAGTATTTATTGCTTTCGAATGTTGTTTTATAATATTGCAAGTTGTGCAGGAATTCCAGTGAGGAAAAAAGTAATGTCTGTTCTCAAACAAACATAAAACAAACACAACAGAACTACTATATATAAAAGATATTCACATAAACACGTTTAAAGTGAAGGGTTTATACCATTTTTTTAGTCTATGGTTTATACTCTCATTCATTTGATACGCGAGCCCGACGACGGTTTCAGTTTCGCTTTAAATAAATTAATTTCGCTTTAAAAAAATATTGTTTGTAATGAATGCTACTATAATTTGTTTATTTTATACTTATATTTTCATTCTTGTTTTGTATTGACTGAATACGGTTAAATTTACAGGATTTGTTGTGGAAATAGCCTAAAATACATGTTTATTGCCTAATGTTTCTAAACGTTTAGTTTTTGCCGGTATTTTACCTACATTATTTTAATGTAATAATAAAATGCGACTGATACACTAATGCGATTTTTTTTTTATCTCAAAAAATAAATATAAATATAGAAATAAAACAATTATATTGTGTTCATTACTCCAACAAAAACCGACTTTGGGTTTACTGTTAAAGGCTAGGCTAATTGTAAGGGGTTCTTGGAAAATGTTCTACCTTATAAGTTTGAGAAAGCTTGGGTTAAATGAAGTATCTGTGATTAACTGTACACCAAATCACAATCTCGTGCTATGGCCACTGCCATTAATACAGGCATCGAAAGGTATTTTACGCTATTTACTCCTGCTTTTCGTTTTGAACGCGGAAGTATGATAAAGGCACTGTCACGTACAAAATAGGTCGTTTTAACGACATATCTCGTTATTACGAGAAAACGTCGTTTTAACGACATATCTCGTTATAAATGAGTGGAAAAAATATTATGTGGCAGCAATGGGCCACCGTAGATAACATAATACTCTTAATTGTAACTAGAAACATAAGTTTTCTGTAAAGATGCTTTGAAACAATATGTATTGTAAAAGCACTATACAAATAAATATCAATTGAAAAATATGTGATATAAATGAAACACTAAAAATAACTGAGTTAAAGACTTACACTAAACGAAATGTGTTTCAACTTGCATAACATACAACGTACCTCAGTGGGAAATTTACCATCAAAAGGCATGTGACATTCCATTTTATAACATCCAGGAGATTGCAGTGAGTCAATTTAAATAAAAAAAATAAAAAAAAACATTTTTTACTTGTATTTATGTAATATTGCCAGTGTGCAAACAAACAGCAAAGATTAATTTTAAATGAGGGAGAAAGCAACAAAATCTTGAATTTTGAAAAAGGAAAGCCCAACAGAATCACTCATTTACTTCTATCATTTTGCTATCATGGTGTTAATTATTTCAGTTTTACACAACTCATTTGGGTATGTCAACTCACTGTAATTTCAAATAAACTTTATTTTTACATAAACTGAGTCTGAATTGATCACACATACAATAAAAAAAAAAAAAACTCTAAATGACAGAAATAGCCTGTCTCCAACCTTCAAGCTACCATCTTTACACAACTTATTTGAACAAATACTCGCTGTACAATACAGTATAACAATGTGCCTTCAGAATACAGTGGTTGCTTTCATTGTTTCTTTCTAAATGTCCCAAATACAGTGCATTAATAAATGTATACACATTTCAGTTTTAGAGGAATGCATTGTACAGATTAAAAAAAAAAAAAAAAGTCTGCAGGAAAAAAAAGAAGAAAAAAAAAACAGAACAACAGCTACAGTACACAATTAATTTCCTTGAGGAATCTTTTGATTAAGAGGAAGAAAAAAAACAGGCATCTTAAGGCTTATGTTGAATTAGATGGACCTTCGTCAGGAAGTATAAAGGTCTGCAGAGTAAATACTGCTATGTCATACTGCCCTTTTATATTTCAACTGAACAAAACACTGATATTTATAACCATCATCCAAGAAAGTCTATTCTTACTATCAAAAGAAGTCAAGAGGAAAGACAAGAAAAGAAAGAAGCGGGAAGCTTTTCGCCTCCAGTTACGTTCTGTCAGTTTGAAGATGAATTCTAAGAGGACGTCCGATACACATAAAACCTTTTTGAAATATTTGCATCCTTCAGACTGTCTTAGCAAACTCATTCTGGAATGTACAATGTTGATGGGTCAGCGTCTGTGACTGCCTGCATATGATAGTAGTCGGCATGTCTTCATTAATGGGCGTCTACGCCTGTGCGCCTCGTGCGAGGGCAGCAGGGTTCCTGAGAGGCCTGCCAGTGTAAGGTAGCAGGTGGTGCAGAGCTGAATGCTGGCGGTGGAGGTGAGGGGGGGAAAGGAGATCTTCCCCAGATAACTTTCAGTTCTCCTCAATGAGGGTGAGATCTAGTTCAGTACAATCCCTTTCAAACACGCTAGTTTGTCCTCCGTCACGCTCTTCAGGGTCCTCCTCCTCTCTCTCCTCCTCCTCGTCACTTTCACTTAACGGCCCAATACTTGTCCTACCCAGGCCTTCAGCTGGTGAACATGAGCCTCTGAAGTCTCCAAAAAAAGGCTCAAGGCCCATACAGACATCACCCCCACAGGCCAATCGGCCACGTTCCATATAACTAAGAGGGTC
>TU48544
CAAAGTCTCCTGAAAAAAAAGAAGAAAAAAAAAACAGAACAACAGCTACAGTACACAATTAATTTCCTTGAGGAATCTTTTGATTAAGAGGAAGAAAAAAAACAGGCATCTTAAGGCTTATGTTGAATTAGATGGACCTTCGTCAGGAAGTATAAAGGTCTGCAGAGTAAATACTGCTATGTCATACTGCCCTTTTATATTTCAACTGAACAAAACACTGATATTTATAACCATCATCCAAGAAAGTCTATTCTTACTATCAAAAGAAGTCAAGAGGAAAGACAAGAAAAGAAAGAAGCGGGAAGCTTTTCGCCTCCAGTTACGTTCTGTCAGTTTGAAGATGAATTCTAAGAGGACGTCCGATACACATAAAACCTTTTTGAAATATTTGCATCCTTCAGACTGTCTTAGCAAACTCATTCTGGAATGTACAATGTTGATGGGTCAGCGTCTGTGACTGCCTGCATATGATAGTAGTCGGCATGTCTTCATTAATGGGCGTCTACGCCTGTGCGCCTCGTGCGAGGGCAGCAGGGTTCCTGAGAGGCCTGCCAGTGTAAGGTAGCAGGTGGTGCAGAGCTGAATGCTGGCGGTGGAGGTGAGGGGGGGAAAGGAGATCTTCCCCAGATAACTTTCAGTTCTCCTCAATGAGGGTGAGATCTAGTTCAGTACAATCCCTTTCAAACACGCTAGTTTGTCCTCCGTCACGCTCTTCAGGGTCCTCCTCCTCTCTCTCCTCCTCCTCGTCACTTTCACTTAACGGCCCAATACTTGTCCTACCCAGGCCTTCAGCTGGTGAACATGAGCCTCTGAAGTCTCCAAAAAAAGGCTCAAGGCCCATACAGACATCACCCCCACAGGCCAATCGGCCACGTTCCATATAACTAAGAGGGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48535 False 3177 lncRNA 0.35 2 2040099 2046862
TU48544 True 895 lncRNA 0.45 2 2040099 2095847

Neighbor

gene id symbol gene type direction distance location
CI01000006_02018771_02022870 ZMAT2, ZMAT2.L coding downstream 17229 2018282 ~ 2022870 (-)
CI01000006_02000378_02005713 NA coding downstream 33886 2000378 ~ 2006213 (-)
CI01000006_01990505_01991683 FOXI3A coding downstream 48320 1990057 ~ 1991779 (-)
CI01000006_01923864_01927117 SNX12.L, SNX12 coding downstream 112442 1923713 ~ 1927657 (-)
CI01000006_01897638_01904724 SLC7A3A coding downstream 135329 1897516 ~ 1904770 (-)
CI01000006_02144479_02144813 NA coding upstream 48588 2144435 ~ 2144813 (-)
CI01000006_02148291_02155645 PWWP2A coding upstream 51016 2146863 ~ 2156367 (-)
CI01000006_02164837_02173343 CCNJ, CCNJL coding upstream 68195 2164042 ~ 2173343 (-)
CI01000006_02186968_02197039 SLC23A1 coding upstream 91062 2186909 ~ 2197039 (-)
CI01000006_02224923_02225933 PFDN1, PFD1 coding upstream 129076 2224923 ~ 2226124 (-)
G42744 NA non-coding downstream 62869 1976687 ~ 1977230 (-)
G42739 NA non-coding downstream 70320 1969554 ~ 1969779 (-)
G42721 NA non-coding downstream 123603 1916288 ~ 1916496 (-)
G42714 NA non-coding downstream 199290 1840476 ~ 1840809 (-)
G42692 NA non-coding downstream 251465 1785501 ~ 1788634 (-)
G42808 NA non-coding upstream 62245 2158092 ~ 2160200 (-)
G42818 NA non-coding upstream 65420 2161267 ~ 2161749 (-)
CI01000006_02297635_02343401 PPP3CA, PPP3CB non-coding upstream 246704 2297082 ~ 2343401 (-)
G42868 NA non-coding upstream 275473 2371320 ~ 2371529 (-)
G42890 NA non-coding upstream 319894 2415741 ~ 2415961 (-)
G42667 NA other downstream 149343 1888988 ~ 1890756 (-)
G42285 NA other downstream 1683960 355813 ~ 356139 (-)
CI01000006_02285649_02294759 NA other upstream 188985 2284994 ~ 2296494 (-)
G42934 NA other upstream 473066 2523776 ~ 2582206 (-)
CI01000006_02624725_02626124 COX8A other upstream 473927 2624436 ~ 2626776 (-)
G43102 NA other upstream 812604 2908451 ~ 2933984 (-)
G43549 NA other upstream 2256663 4352510 ~ 4355428 (-)

Expression


Co-expression Network