RNA id: CI01000006_02144479_02144813.mRNA


Basic Information

Item Value
RNA id CI01000006_02144479_02144813.mRNA
length 266
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000006_02144479_02144813
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2144435 ~ 2144813 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCTGCAACTCTGAAGAGCTGCTGATTGGTCTGTTGCCTAGAGCACTGCCATTGGCCAAGAGCCAGTCAGATTGGGAGGAGCCATCCACAGTTGGAGAAGCAGATTTTTCTTTGCGTAGGCTTTTGTGTTTAAAGCATGTGAAAGAACACAGCACAGAGTTACAGCCGTTGTGGATTCGAGGTGGTGATCTGGCACACGTCAATGCAGGGTTTTTAAGATAACTTATAAAGATTAAAAAAAATAATTGATGTAAAAATGCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48544 lncRNA downstream 48588 2040099 ~ 2095847 (-) True G42759
TU48535 lncRNA downstream 97573 2040099 ~ 2046862 (-) False G42759
TU48518 lncRNA downstream 167205 1976687 ~ 1977230 (-) True G42744
TU48513 lncRNA downstream 174656 1969554 ~ 1969779 (-) True G42739
TU48493 lncRNA downstream 227939 1916288 ~ 1916496 (-) True G42721
TU48604 lncRNA upstream 13279 2158092 ~ 2160200 (-) False G42808
TU48605 lncRNA upstream 13760 2158573 ~ 2160200 (-) True G42808
TU48617 lncRNA upstream 16454 2161267 ~ 2161749 (-) True G42818
TU48675 lncRNA upstream 197738 2343917 ~ 2354261 (-) True G42863
TU48680 lncRNA upstream 226507 2371320 ~ 2371529 (-) True G42868
CI01000006_02061413_02070784.mRNA mRNA downstream 73030 2061242 ~ 2071405 (-) True CI01000006_02061413_02070784
CI01000006_02054408_02058623.mRNA mRNA downstream 85662 2054408 ~ 2058773 (-) True CI01000006_02054408_02058623
CI01000006_02018771_02022870.mRNA mRNA downstream 121565 2018282 ~ 2022870 (-) True CI01000006_02018771_02022870
CI01000006_02000378_02005713.mRNA mRNA downstream 138222 2000378 ~ 2006213 (-) True CI01000006_02000378_02005713
CI01000006_01990505_01991683.mRNA mRNA downstream 152656 1990057 ~ 1991779 (-) True CI01000006_01990505_01991683
CI01000006_02148291_02155645.mRNA mRNA upstream 2050 2146863 ~ 2156367 (-) True CI01000006_02148291_02155645
CI01000006_02164837_02173343.mRNA mRNA upstream 19229 2164042 ~ 2173343 (-) True CI01000006_02164837_02173343
CI01000006_02186968_02197039.mRNA mRNA upstream 42096 2186909 ~ 2197039 (-) True CI01000006_02186968_02197039
CI01000006_02224923_02225933.mRNA mRNA upstream 80110 2224923 ~ 2226124 (-) True CI01000006_02224923_02225933
CI01000006_02227697_02229505.mRNA mRNA upstream 82120 2226933 ~ 2230287 (-) True CI01000006_02227697_02229505
TU48426 other downstream 253679 1888988 ~ 1890756 (-) True G42667
TU48457 other downstream 355801 1785501 ~ 1788634 (-) True G42692
TU47983 other downstream 1788296 355813 ~ 356139 (-) True G42285
TU48637 other upstream 140019 2284832 ~ 2290690 (-) True G42837
TU48753 other upstream 424100 2568913 ~ 2582206 (-) True G42934
TU48776 other upstream 424961 2569774 ~ 2570203 (-) False G42952
TU48777 other upstream 424961 2569774 ~ 2570195 (-) False G42952
TU48778 other upstream 424961 2569774 ~ 2570192 (-) True G42952

Expression Profile