CI01000006_02061413_02070784


Basic Information

Item Value
gene id CI01000006_02061413_02070784
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2061242 ~ 2071405 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_02061413_02070784.mRNA
ATGTGTGGCATTTCTTGTTAATTTTGTTGAATTAGAGATAATTGATAATCGATGCCCAAGGGAAAATTATGGGATTTTTTTTACATAACAATGCTGCTTTCTTGGAAACTGAAATATAAAAATTATACATCCAGTAAAAGCATTGACAGCTAACCACTAATCTTCAAACCCATTAATCATTAATAAATCAATACATGCTTTTCATGCATGTACACAAACTATGACAGATGAGAAAAGTTCCCAACAGGTTTTAAATAATACTTGAGTTATTTTATCATTAAAGATTATAATTATTATTTCCTAGTATCTCTCTCATATACAGTACTATTCAAAAGTTTGGGGTCAGTAAGACTTTTTCGATCAATTTAATTCTTGCTTCTTGAGCCCTTGCTGAACAAAAGTATTCATTTCTTTTTTTAAAAAGAAAACAATATATATTAAAATATATCATATAAACAATTACAAGGATCTAAATTGTCTCTGTCTGGCTTTGGAGCCAATAGCATGTTGAAGTTATTCCTATTGGAGAACAGCCTTGATAGAAAAGAGAAGTTTTATTTTTAGTATATGAGCCATTTACACGTGAATTAGTGACTTCGTGAGTGTACCACAGCAAAGAAAATGATTGTTTTTCTATTTGTTATCTCAAGTATACATGTAGCAACCTGCAGCGAATCATCAAAACTGGTGGTTGGACGGGTTGGGGAAACAGTTACTCTTCCATGTAAATACGACATCAACACCAACGGCCTATTGAGCATTTGTTGGGGGCGACATCAGTCAGTATTCAGCTGTGAGAACACCGTTATCTCCTCCGATGGCTTGCAAGTGAACTACAGAGAGTCCCATAGATTCAGCTTGGCCAGTGGACTCGACCAAGGGGATGTTTCACTTACCATAAGGGCTGCTGAAAACAGGGATGCTGGGATGTATGTGTGCCGTATCGAGATCCCTGGACTTTTCAATGACATTAGTTACAATGTTTATCTGTTCATCAGCAATGGACTGGATCCAAACAGAGTCATATCAGGAACACAACTGGTCCCTACAACAGTAAAGCAGGAAAAGCAAGTCTACTATGTGTCAGACCCAACCACACTCATTACTGAGTTTTATGACATACCAGAAAAGAAAACTGCAGATGTTACTGACATCTACATAGATGAACCCAGTGCAGTGGCCCATACTGAGAACTGCGGCGCTCAAGAAAACGGACCAGCAGCAGGGGAAGTTAAAATCTGCCAGGTCTCCTCAGCCCAAACAACCACACTTGAATATGGTGTGATGAGTTTCGAGGGTGAGAGTGTCACTTTGCCGTGCAAATATGACAGCAAATACCATGGAAAATGTCAGATATGCTGGATGAGAGGAGACATTCCCAATATGGGTTGTGGTGATGAAATTATTGCAACTGATGGGGATAAAGTGGTGAGGAAAAAATCAGGAAAGTACCAGATGGTGGGAGAAATACCGCATGGCGACGTGTCTCTGACAATCCGTAACATTGGAAAAACAGACTCTGGCAAATATGGATGCCGTATACATGTTCCCGGACTGTTTAATGATGAGATGTATTACGTTCACTTGATTGTTGAAGATGAAAAAAACAAAACACAAGAGAATTCTTCATTCGTCAGTTCTTCAAATGCTCCCGAGAGCAGCACTATTGGACTGTGGACCTCCGATATAACATACGGTATGACACAGCAGATAATCTGTGCTGTTTTTAATAGTTTGCAACATGCTCTATGTATTTGCAAATATGCTGATTGCATTTTTCATTATAAAGCAAAAACCACAGTTGAGGATCCTGAATTGTCCCCTGTGGAACACAAAGATAGTGTAAATGCATCTGCAGTTATTGTGCCTGTTATCCTGTTACTGTTGGCTTTGATAGTCATTGTTGGCATTCTGATATGGAAGCAAAAGAAGAAAACCAGAGCTGCGTTAGACATAACCCAGAACTCGGACATCTCGGTCATCTACAGTAATTCTGGCAGCAGTGTGGGCCTGTACAACAGAGAGATGGCTGTGGAAAACATCTATCAAATACAGACTGAAAATGAATATGAACAGTGGCATTAATTTCTTGGCAAATTCACATTTACTGTTAACGTTTAAGTTGATCGGTGTGGAGTCTGTGTTCTGTATTGTTTGTAATAATGTGACAGCTATTGCTTATCAGAGGAATCATTGCTGTGGACTATCCTTTCTCTAATGTCTAGAGGCTAACTGCAACACTATATCATTATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_02061413_02070784.mRNA True 2256 mRNA 0.39 11 2061242 2071405

Neighbor

gene id symbol gene type direction distance location
CI01000006_02054408_02058623 NA coding downstream 2469 2054408 ~ 2058773 (-)
CI01000006_02018771_02022870 ZMAT2, ZMAT2.L coding downstream 38372 2018282 ~ 2022870 (-)
CI01000006_02000378_02005713 NA coding downstream 55029 2000378 ~ 2006213 (-)
CI01000006_01990505_01991683 FOXI3A coding downstream 69463 1990057 ~ 1991779 (-)
CI01000006_01923864_01927117 SNX12.L, SNX12 coding downstream 133585 1923713 ~ 1927657 (-)
CI01000006_02144479_02144813 NA coding upstream 73030 2144435 ~ 2144813 (-)
CI01000006_02148291_02155645 PWWP2A coding upstream 75458 2146863 ~ 2156367 (-)
CI01000006_02164837_02173343 CCNJ, CCNJL coding upstream 92637 2164042 ~ 2173343 (-)
CI01000006_02186968_02197039 SLC23A1 coding upstream 115504 2186909 ~ 2197039 (-)
CI01000006_02224923_02225933 PFDN1, PFD1 coding upstream 153518 2224923 ~ 2226124 (-)
G42744 NA non-coding downstream 84012 1976687 ~ 1977230 (-)
G42739 NA non-coding downstream 91463 1969554 ~ 1969779 (-)
G42721 NA non-coding downstream 144746 1916288 ~ 1916496 (-)
G42714 NA non-coding downstream 220433 1840476 ~ 1840809 (-)
G42692 NA non-coding downstream 272608 1785501 ~ 1788634 (-)
G42808 NA non-coding upstream 86687 2158092 ~ 2160200 (-)
G42818 NA non-coding upstream 89862 2161267 ~ 2161749 (-)
CI01000006_02297635_02343401 PPP3CA, PPP3CB non-coding upstream 271146 2297082 ~ 2343401 (-)
G42868 NA non-coding upstream 299915 2371320 ~ 2371529 (-)
G42890 NA non-coding upstream 344336 2415741 ~ 2415961 (-)
G42667 NA other downstream 170486 1888988 ~ 1890756 (-)
G42285 NA other downstream 1705103 355813 ~ 356139 (-)
CI01000006_02285649_02294759 NA other upstream 213427 2284994 ~ 2296494 (-)
G42934 NA other upstream 497508 2523776 ~ 2582206 (-)
CI01000006_02624725_02626124 COX8A other upstream 498369 2624436 ~ 2626776 (-)
G43102 NA other upstream 837046 2908451 ~ 2933984 (-)
G43549 NA other upstream 2281105 4352510 ~ 4355428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location