RNA id: CI01000006_02624725_02626124.mRNA



Basic Information


Item Value
RNA id CI01000006_02624725_02626124.mRNA
length 1153
RNA type mRNA
GC content 0.41
exon number 2
gene id CI01000006_02624725_02626124
representative False

Chromosome Information


Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2624436 ~ 2626776 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGAAACATTAACCAATGTAAAAAGCATGAAAATTATAATATTAAGAGGTGTTCATCTTTTATGACACAAGTACGAAACAACTTAAAAATTTAATTAAAAAAATAAATAAATAAATAAAAATGAAAATTGCAGACTACTATTCAAAAATAAAATGGAGGCCACCACTGTGAGAGTCTACCATGGTTATTATGTGTCCAGTAGGCTTTCTTATTTCAAATTTGTCTTAGGCCCTTTGAATTTTGGTGACATGCTGCCTTAGTTCTTCATAATTTAACAGTAAATAATATATTCTCATAGTATGCACACAAGGATCTGTCAACTGGCATATGTTTTGCTAGGTTCATTAGTTCGTACAAAGCCAGGCGATTATGTAAGAAGTAAAAGAAGATTGTTCAGTGACCATTTAACTGTCAGTGTCACTGTTACATAACTACACAAATGTAATGAATAATCTTAATAATGTAAAACTATAGTGACGGTGCAAGACTGTTTATTTATAACAGTCTAAACTAAAAATGGGTTATGCACAAAAAAACTACAACTCCCACACGCATACGGATGTTTCCCATCAGCACTTGCTGCAGTGTTGCCGCACATTCCGGGGCCATCTTCCTCTTCCTGTTCATTACATACTCGATTTTAGAGCAGCAAGATGTCTGGATTTCTGCGGGGAATTGCTCGGATCCGCACCGCTCCGGCTCTGCGGGGATCAACCATCACCCAGCGAGCCAACATCGCTTCGCGACCTGCCAAGGATGCGCTGGGGCCCGCTGAGACAACAGCTGGTCTGGCCATATTTAGTCTTGCCATCCTGGGACCAGCTGGGTGGGTTCTGGCCAACCTGGAAAACTATAAAAAGAGGGACTCCGCTGCATCTGAGTGATCAATCTGTCATTGACTGAAAGCAGTTTGTCTGGTTTTATTGCTTTTAACACATTGGGACCACCATCACACAGACCTCCGACTTACCTGAACAGCAGAACGATTCCTCTCCTTTGAGCCACCCAGCTACCTCTCCATGCGACTGGTTACTTTCCTCCAAACACTCCGGTCTTCTTTACACCGAGCATCTGCTCCTTCTTACCAACTGTGTAATAATAACATATAATCATGGGTGTTTCTTATTACCTGGAGCTGTTACATTTGAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU48754 lncRNA downstream 44311 2523776 ~ 2580144 (-) False G42934
TU48752 lncRNA downstream 66478 2523776 ~ 2557977 (-) False G42934
TU48729 lncRNA downstream 137709 2486225 ~ 2486746 (-) True G42913
TU48728 lncRNA downstream 138341 2485899 ~ 2486114 (-) True G42912
TU48726 lncRNA downstream 139138 2485096 ~ 2485317 (-) True G42910
TU48816 lncRNA upstream 43507 2670283 ~ 2671713 (-) True G42987
TU48813 lncRNA upstream 50946 2677722 ~ 2681500 (-) True G42986
TU48824 lncRNA upstream 63169 2689945 ~ 2690217 (-) True CI01000006_02689895_02705309
TU48834 lncRNA upstream 82748 2709524 ~ 2710052 (-) True G43005
TU48915 lncRNA upstream 230192 2856968 ~ 2859398 (-) False G43084
CI01000006_02617160_02621622.mRNA mRNA downstream 2833 2617130 ~ 2621622 (-) True CI01000006_02617160_02621622
CI01000006_02516145_02524371.mRNA mRNA downstream 98646 2516129 ~ 2525809 (-) True CI01000006_02516145_02524371
CI01000006_02481958_02482821.mRNA mRNA downstream 141327 2481395 ~ 2483128 (-) True CI01000006_02481958_02482821
CI01000006_02448953_02467739.mRNA mRNA downstream 156716 2447950 ~ 2467739 (-) True CI01000006_02448953_02467739
CI01000006_02297635_02343401.mRNA mRNA downstream 281054 2297082 ~ 2343401 (-) False CI01000006_02297635_02343401
CI01000006_02634636_02643446.mRNA mRNA upstream 7512 2634288 ~ 2643446 (-) True CI01000006_02634636_02643446
CI01000006_02648355_02660501.mRNA mRNA upstream 19632 2646408 ~ 2660801 (-) True CI01000006_02648355_02660501
CI01000006_02689895_02705309.mRNA mRNA upstream 62879 2689655 ~ 2708567 (-) False CI01000006_02689895_02705309
CI01000006_02720061_02749853.mRNA mRNA upstream 93191 2719967 ~ 2749874 (-) True CI01000006_02720061_02749853
CI01000006_02766733_02767600.mRNA mRNA upstream 139589 2766365 ~ 2768738 (-) True CI01000006_02766733_02767600
TU48753 other downstream 42249 2568913 ~ 2582206 (-) True G42934
TU48637 other downstream 329457 2284832 ~ 2290690 (-) True G42837
TU48426 other downstream 733699 1888988 ~ 1890756 (-) True G42667
TU48457 other downstream 835821 1785501 ~ 1788634 (-) True G42692
TU47983 other downstream 2268316 355813 ~ 356139 (-) True G42285
TU48938 other upstream 281675 2908451 ~ 2933984 (-) True G43102
TU49430 other upstream 1725734 4352510 ~ 4355428 (-) True G43549
TU49494 other upstream 1932733 4559509 ~ 4562068 (-) True CI01000006_04560607_04560993
TU51020 other upstream 4346448 6973224 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51023 other upstream 4346674 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736

Expression Profile