RNA id: CI01000006_02720061_02749853.mRNA



Basic Information


Item Value
RNA id CI01000006_02720061_02749853.mRNA
length 1291
RNA type mRNA
GC content 0.46
exon number 10
gene id CI01000006_02720061_02749853
representative True

Chromosome Information


Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2719967 ~ 2749874 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTACAAAAAAAAAAAAAAAAATGACGCACGGATGCAATCAAAGTGAAGCCTTTCTACCCGAACACTCACCCACAGCTCCAAGCACGAATGCCAAGCCAGCTGCACATCATAATTGCGCGGAGACAAAAATAGAACAAGCAGTCAATTTCATTCGCGTTGGCATATCTTCAGAGGGTATAGGACACACATATGCTCAATGTTATGTTCAAGAGAGAGACTACAGGCAAGCCAACATAACAGATAACAACAAAATGCCTACATCAGTCGGTCGAGTGATAAATGCGGTTGTGTTAGAAATCTCTATCTTTAGGATATACCGTGTCCCCAGGCTCGCCACGGCACGCGGGACGAAATTTACGACCCCCTTCAACTCGGAAAAAACCTGGAGGGATTCACTTTCGCTGTGGCCGAAAACACAGTCTAGATACTCCATCATACACGGAGGCATTAAATATCCACCCCACCCGCGCTTTCTGTCTCAGATGATGGAGTCATTTGTAATCGCCCTCGACTCTGTTCAAGAAATTCTCAGACGGTCAAGTTTTGTTCTGAGCCGTGGGAATTTCGAGACGACTGGGGCGTGCTCAGCAGTGGACACAGAACTAATACGATCAGGGCTTTTGCTAATTGGAGCACTGAAAGTCACATGGCCGTGGACTGGAAGCAAGCATACTGACAAATCACTAGCAATCACGCTAACAAAGGGAAGCCATTTTGCATATATCATCAGATTTAACACCACAAAGAAGATGGATGCGGGAAGCATGGCATTTATCGAAGAGCGGATGGATGTCATGAGAACTTTGGTACCAAGTCGGTATCAACATTTTAAAATCCTGACAGTACTTGCTTTTCTACAGTACCACAGGGAAGGGAAAAAAAAAAAGACAAGAAAGGAAGACCACCTGTCCATCAGGAAAGCCACCAGCTTTCCTTCCTCCCCCTACACTCTCAGTATCTCCGAGCCCAATGACGGCCAGCGATACTCCTTATCAGCTGCAAATGCTACTGGATTTTCACACACCACAGCCTGGAAAGATTTATCTGACACCAGCTCACAATCGAGTTATCCTCAGTTCTTCAGCCCTGGCTGCCCTGCCACAGAACAGTTGGTGATAGAGCTAATAGAGGGTTGCAACATGGAAACGGCAGAAAAAGACAACAGATGTTCAAGAGGGCGATACGATGAGGATTAAAACATGGTATTTTGGTGGCTTCGTTCTTTAGATGTGCTGACGTCCATTGTAGTTTATCAATGTATGGGGGCTACAGGATTAGTGCAGGAAAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU48834 lncRNA downstream 9915 2709524 ~ 2710052 (-) True G43005
TU48824 lncRNA downstream 29750 2689945 ~ 2690217 (-) True CI01000006_02689895_02705309
TU48813 lncRNA downstream 38467 2677722 ~ 2681500 (-) True G42986
TU48816 lncRNA downstream 48254 2670283 ~ 2671713 (-) True G42987
TU48754 lncRNA downstream 139823 2523776 ~ 2580144 (-) False G42934
TU48915 lncRNA upstream 107094 2856968 ~ 2859398 (-) False G43084
TU48917 lncRNA upstream 107176 2857050 ~ 2859398 (-) False G43084
TU48916 lncRNA upstream 107261 2857135 ~ 2859398 (-) True G43084
TU48927 lncRNA upstream 133951 2883825 ~ 2980614 (-) True G43092
TU49109 lncRNA upstream 362637 3112511 ~ 3116186 (-) True G43262
CI01000006_02689895_02705309.mRNA mRNA downstream 11400 2689655 ~ 2708567 (-) False CI01000006_02689895_02705309
CI01000006_02648355_02660501.mRNA mRNA downstream 59166 2646408 ~ 2660801 (-) True CI01000006_02648355_02660501
CI01000006_02634636_02643446.mRNA mRNA downstream 76521 2634288 ~ 2643446 (-) True CI01000006_02634636_02643446
CI01000006_02624725_02626124.mRNA mRNA downstream 93191 2624455 ~ 2626776 (-) False CI01000006_02624725_02626124
CI01000006_02617160_02621622.mRNA mRNA downstream 98345 2617130 ~ 2621622 (-) True CI01000006_02617160_02621622
CI01000006_02766733_02767600.mRNA mRNA upstream 16491 2766365 ~ 2768738 (-) True CI01000006_02766733_02767600
CI01000006_03018948_03029493.mRNA mRNA upstream 268525 3018399 ~ 3031161 (-) True CI01000006_03018948_03029493
CI01000006_03043665_03066360.mRNA mRNA upstream 293364 3043238 ~ 3067159 (-) True CI01000006_03043665_03066360
CI01000006_03188826_03200931.mRNA mRNA upstream 438903 3188777 ~ 3200931 (-) True CI01000006_03188826_03200931
CI01000006_03205005_03228985.mRNA mRNA upstream 455122 3204996 ~ 3229508 (-) True CI01000006_03205005_03228985
TU48776 other downstream 93781 2569774 ~ 2570203 (-) False G42952
TU48777 other downstream 93781 2569774 ~ 2570195 (-) False G42952
TU48778 other downstream 93781 2569774 ~ 2570192 (-) True G42952
TU48753 other downstream 137761 2568913 ~ 2582206 (-) True G42934
TU48637 other downstream 424969 2284832 ~ 2290690 (-) True G42837
TU48938 other upstream 158577 2908451 ~ 2933984 (-) True G43102
TU49430 other upstream 1602636 4352510 ~ 4355428 (-) True G43549
TU49494 other upstream 1809635 4559509 ~ 4562068 (-) True CI01000006_04560607_04560993
TU51020 other upstream 4223350 6973224 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51023 other upstream 4223576 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736

Expression Profile