RNA id: CI01000006_03205005_03228985.mRNA


Basic Information

Item Value
RNA id CI01000006_03205005_03228985.mRNA
length 3148
RNA type mRNA
GC content 0.50
exon number 24
gene id CI01000006_03205005_03228985
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3204996 ~ 3229508 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACACTAATTATAGCCTAATGCACATGGAAAAGTAGACATTGACTAATATTGTGGTAATATGACACAAACAACAGGTGCTAGTGACCTGCAAGTGATATTTCTTTTAAAAACGTTAGAAAACAAGTTTATGTTTTTTGTTCGAATAGCTTACTGACTTTAATAGTAGGGGAGCTTACTACACTACAAGCACAAGAGACGCGTTCAGTTTTGTTCCGTCGCGTCGCTCGCTTGCAGTACGTGCCTCTTCAACGAGAGGCGTTGCTTTACTAGCCTATATGTTTTTAAAGAAGAGATTTCCGCTTCCTGATGTTGTTTTAAACGCTCAATTGATCACAAGCCAGAGCAGCAGGACTGACCGCAGCTGCAACTGACTGAAGTCTCCAATGAATCCCCTGCTAAGCGGAGGCGTGAACGTTAAGTGGCTCGTGCAATGAAAGTGTCATCATCATTTAAGACTACAGGCACGAGCGAGTGTCTAAACTGACCGAGTCCGGCGGCAGCACAGATCCCGAGACTTCAGCATGTCGGAGCGTGGAGGGCTTCAGCAGCGAACGGGAGCTCCGTCTCCCCACCTGCAGCATCTCAAGACGGTCACTATTTCTTCGGGTCGCCCGGTTCAGATGAACCTGTTCGCGACATGGGAGATTGACAGCTCCTCTCCCAGCTGTGTGCCCAGACTTCTCAGTCTAACTCTTAAAAAATTAGTGATTTTGAAGGAGCTGGACAGGGATCTCACATCGGTGGTCATTGCAGTTAAACTTCAGGGCTCAAAACGCATTTTGCGGTCAAATGAAATCATGCTATCCTCTGCTGGCCTTACAGAGACTGATCTTCAGCTGACCTTCTCTCTTCAGTACCCACACTTTTTGAAGAGAGATGCCAACAAGCTTCAGATTATGCTCCAGAGACGCAAGAGGTACAAGAATCGCACTATACTGGGCTATAAGACCCTCGCACTAGGAATGATAAATATGGCTGAGGTGATGCAGCACCCTACAGAAGGAGCTCAGGTGTTGGGCTTACACACAACGGTGAAGGATACACCAGTGCCCGTTGCTGAGATCAGGGTCTATTCTCTCTCCAGTCAGCCTATTGACCCAGAGGGACCAAAGTCCAAGCTATCCGATCGCTCACCAGACTTTGATAATTACTCTGAGGAGGAAGAGGAAAGCTATTCATCAGAGCAGGATGGCAGTGATGATCCTCTACAGGGGCAGTACCTCTACGACGATGAGGATGAACTGAGGAAAAAGAAACCTCGTCGTAAGCTCCCTTCCACAGCCTCCATCACCAGAGCTAACCAACCCAACATCAAACAGAAGCTTATGGCATTGGTGAAATGGTTCAAAGTGTCTGATGAGGTGGGGTTCGGTTTGGATCATGTGTCCCAAGAGCAGATCCGGGATGTGGAAGAGGACCTGGATGAGCTCTATGACAGTCTTGAAATGTACAACCCCAGTGACAGCGGCCCAGACATGGAGGAGACGGACAGTATTATCAGCACCCCCAAACCCAAACTCCGGCCATATTTTGAAGGCATGTCACAGTCCAGCTCTCAGACGGAGTTCGGTAGCTTGAATAGTAGATGCAGCCACAGCAAAGACAGGCTGAATCCTAGGGGCGAACAGACTGTATCTGGTAAAATCCAGCGTTCCCCCAGTGCGCAGCTGGACGATGCTTTCTCAGAAATGGACACACTGGAACTCAATGAAGTGGAGGTGATAGCCGACGGGACCCCTAGCATCACTTTATCAGTGGCGGAGAGGCCCCGAACCCCACAGAGGAGCAATAGCACTAACATGCCATCTCCCAGGCTGGATGGCAGTCATACCCCCAAACAGAGGCGAGGGACACCTATGAAAGAGAGACAGCTGTCCAAACCGCTCAGCGAACGCACCAACAGTTCAGACAGTGAGAGATCTCCCGAGCTCAGCCTCACCCCTCAGATGCCAAGGAAGATAGTATACGACCAGCTCAACCAGATTCTGCTGTCTGACAGCACCCTTCCTGACAGCCTTATCTTGGTGAACGGCAGCGATTGGCAAGGACATTATGTGGCTGAGCTGCTGCAGGCCCAGAAGCTGCCAGTGGTGTGCACCTGTTCAGGATCAGAAATCCAAGCCGTCCTTTCCGCCCTGCTCACACGCATACAGAAATTCTGCAACTGTAACTCCATCATGCCCAAACCGGTGAAGGTTGTGGCGGTTGGAGGTCAGAGCTACTTAGGAGCTGTTTTGAGATTCTTTGTCTCTCAGCTCGCCAACAAAATGTCTGACTGGCTCAGCCACATGAAGTTTCTTGTGGTGCCTTTAGGCTCTCACCCCGTGGCCAAACACCTGGGTTCTCTGGACAATCGCTACAGTTCTTCCTTCCTGGACAGCTCATGGAGAGAGTTTTTCAGCCGCCCAGAGCCTCCCCAGACTGCTTCTTCCTCTGCTGACTTTGTGGATGTGGCTGGACGAATTCTACAATACATTAACGGATCTGCAGTTACTCATCAGCTCCCCATTGCTGAGGCCATGCTGACCTGCAAACATAAAACGCAAGAAGAAGATTCCTACCAAAGTTTTGTTCCTTTTGTGGGTGTGGTTAAGGTGGGATTGGTAGAGCCCAGCCCAGGATCTTCAGGTGGAGATTGTGAGGAAGGTTTGGCTTTGAGCTTGGCAGTTCCCTCAACGTCTCCACCTGCTCATGGATCTCCCACTGGGATGATGAAAGATTCTGCAACGCCTCCTCCATCACCATCATTAAGTGGCGGACTGGCTGCTCTAGGGAGCCCCAGCATGGACGCAATTGGGCTGCAGGTGGATTACTGGGTATCTTCAGGGGTTGAGAAGCGCAAAGACGGAGAGCGGAGAGACAATAAGAGCACTTTGAAGTGTGCGTTCAGATCCTTGCAGGTTAGCCGACTGCCCGGATCCGGCTCCATTGAGCTCCAGACTGGCTCTAACACCATGTCCATGACTGTAGTGACCAAGGAAAAGAACAAGAAAGTCCCGACCATCTTTCTAGGGAAGAAGCCGAAAGAGAGAGACACAGAGTCAAAGAGTCAGATCATTGAAGGCATCACCAGACTCATCTGCTCTGCAAAGAATCAACAAACCAGTCTAAGAGGGATAGCATTTAAATATGAGTAATGAAATAAA

Function

GO:

id name namespace
GO:0044325 ion channel binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49133 lncRNA downstream 6774 3197876 ~ 3198222 (-) True G43282
TU49122 lncRNA downstream 42696 3162070 ~ 3162300 (-) True G43274
TU48994 lncRNA downstream 43229 3140950 ~ 3161767 (-) True G43148
TU49112 lncRNA downstream 86903 3117424 ~ 3118093 (-) True G43264
TU49109 lncRNA downstream 88810 3112511 ~ 3116186 (-) True G43262
TU49153 lncRNA upstream 173931 3403439 ~ 3407475 (-) True G43301
TU49187 lncRNA upstream 299385 3528893 ~ 3529172 (-) True G43334
TU49188 lncRNA upstream 299821 3529329 ~ 3531381 (-) False G43335
TU49191 lncRNA upstream 299821 3529329 ~ 3531439 (-) False G43335
TU49189 lncRNA upstream 299948 3529456 ~ 3531381 (-) True G43335
CI01000006_03188826_03200931.mRNA mRNA downstream 4065 3188777 ~ 3200931 (-) True CI01000006_03188826_03200931
CI01000006_03043665_03066360.mRNA mRNA downstream 137837 3043238 ~ 3067159 (-) True CI01000006_03043665_03066360
CI01000006_03018948_03029493.mRNA mRNA downstream 173835 3018399 ~ 3031161 (-) True CI01000006_03018948_03029493
CI01000006_02766733_02767600.mRNA mRNA downstream 436258 2766365 ~ 2768738 (-) True CI01000006_02766733_02767600
CI01000006_02720061_02749853.mRNA mRNA downstream 455122 2719967 ~ 2749874 (-) True CI01000006_02720061_02749853
CI01000006_03244690_03253311.mRNA mRNA upstream 15065 3244573 ~ 3253311 (-) True CI01000006_03244690_03253311
CI01000006_03256291_03262601.mRNA mRNA upstream 26635 3256143 ~ 3262601 (-) True CI01000006_03256291_03262601
CI01000006_03270739_03288631.mRNA mRNA upstream 40857 3270365 ~ 3289514 (-) True CI01000006_03270739_03288631
CI01000006_03300379_03312388.mRNA mRNA upstream 70538 3300046 ~ 3312388 (-) True CI01000006_03300379_03312388
CI01000006_03319976_03322908.mRNA mRNA upstream 90379 3319887 ~ 3325039 (-) True CI01000006_03319976_03322908
TU48938 other downstream 271012 2908451 ~ 2933984 (-) True G43102
TU48776 other downstream 578810 2569774 ~ 2570203 (-) False G42952
TU48777 other downstream 578810 2569774 ~ 2570195 (-) False G42952
TU48778 other downstream 578810 2569774 ~ 2570192 (-) True G42952
TU48753 other downstream 622790 2568913 ~ 2582206 (-) True G42934
TU49430 other upstream 1123002 4352510 ~ 4355428 (-) True G43549
TU49494 other upstream 1330001 4559509 ~ 4562068 (-) True CI01000006_04560607_04560993
TU51020 other upstream 3743716 6973224 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51023 other upstream 3743942 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51019 other upstream 3744508 6974016 ~ 6976872 (-) True CI01000006_06974359_06976736

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037698 True 3396 mRNA 0.49 24 NC_007132.7 27513859 ~ 27555345 (+)