CI01000006_03300379_03312388 (ACTN3, ACTN3A, ACTN3B, ACTN3.L)


Basic Information

Item Value
gene id CI01000006_03300379_03312388
gene name ACTN3, ACTN3A, ACTN3B, ACTN3.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3300046 ~ 3312388 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_03300379_03312388.mRNA
TGGTAGTAATGTGATATCCATCCATAGAACTGAAATATATCCACAGTCCTCTGAAATGTATTTTCTACAGACCTTCACTGCCTGGTGCAACTCTCACCTGCGTAAGGCAGGGACACAGATTGAGAACATTGAGGAAGACTTCAGGAATGGACTCAAACTCATGCTGCTGCTGGAGGTTATCTCAGGTGAGAGACTCCCTAAACCAGACAAAGGCAAAATGCGTTTTCACAAGATCGCCAACGTAAACAAGGCCCTGGACTATATCAGCAGCAAGGGAGTCAAGCTGGTTTCTATCGGTGCTGAAGAGATTGTGGATGGCAATGTGAAAATGACCCTTGGTATGATCTGGACCATCATTCTGCGCTTTGCAATCCAGGACATTTCAGTGGAGGAGACCTCTGCTAAGGAGGGTTTGCTGCTGTGGTGTCAGAGGAAGACTGCCCCCTACAGGAATGTCAACGTGCAGAACTTCCACATCAGTTGGAAGGATGGCCTTGCTCTCTGTGCCCTCATCCACAGACACAGACCTGACCTCATCGATTACTCCAAACTGCGCAAGGATGACCCCATTGGCAACCTCAACACTGCTTTTGAGGTAGCAGAGAAGTACCTTGACATCCCTAAAATGCTTGATGCAGATGACATTGTGAACACTCCAAAACCTGATGAGAAGGCCATCATGACCTATGTATCATGTTTCTACCATGCTTTCGCTGGTGCAGAGCAGGCTGAGACAGCAGCTAACAGGATTTGCAAAGTATTGGCCGTGAATCAGGAAAACGAGAAGCTGATGGAAGAATACGAGAAACTGGCTAGTGAGCTTTTGGAGTGGATCCAAAGGACCATCCCCTGGTTGGAGAACCGCGTGGCCGAGCAGACCATGCATGCCATGCAACAGAAGCTAGAGGATTTCAGGGATTATCGTCGTGTGCATAAGCCACCCAAAGTTCAGGAGAAGTGTCAGCTGGAGATAAACTTCAACACCCTACAGACCAAGCTGAGGCTCAGCAACAGGCCTGCCTTCATGCCCTCTGAGGGCAAAATGGTTTCAGACATTGCCAATGCCTGGAAGGGTCTGGAGCAGGTGGAGAAGGGTTACGAGGAGTGGCTGCTCATAGAAATCCGTCGTCTGGAGAGACTGGACCATCTGGCTGAAAAGTTTAAGCAGAAGTCTACCTTGCATGAATCATGGACCACAGGAAAGGAGGAGCTGCTGTCTCAGAAAGATTATGAGTCAGCCTCTCTGATGGAGATCCGTGCTCTAATGAGGAAACACGAGGCCTTTGAGAGCGACTTGGCTGCTCATCAGGACAGAGTAGAACAGATCGCTGCCATTGCACAGGAGCTCAATGAACTTGACTTTTATGATGCTGCCACCATCAATGCCCGATGCCAGGGCATTTGTGACCAGTGGGACAACCTGGGCACCCTGACCCAGAAAAGGAGGGAATCACTGGAGCGTGTGGAGAAGCTTTGGGAGACAATTGACCAGTTGTACCTGGAATTTGCAAAGAGGGCTGCGCCCTTCAACAACTGGATGGATGGAGCTATGGAGGATCTGCAGGACATGTTCATTGTGCACAGCATTGAGGAGATTCAGAGTTTGATCACAGCCCATGACCAATTCAAGGCCACCCTACCAGAAGCTGATAAAGAGCGCATGGCAATCATGGGCATTCATACCGAGATCCTGAAGATAGCTCAGACATATGGGATCAAGGTAGTGGGTGAGAATCCCTACACTGTCCTCTCTCCACAGGATATTAGCAACAAATGGGAAGCTGTGAAGCAATTAGTCCCAATGCGTGACCAGATGTTGCAAGAGGAAGTGGCCAGGCAACAGTCCAATGAGAGGCTGAGGCGCCAGTTCGCTGCTCAGTCCAATATCATAGGTCCCTGGATTCAGACCAAGATGGAGGAGATCAGCCATGTGTCAATTGACATTGCCGGTTCCCTAGAGGAACAGATGAGCAATCTGAAAACATATGAACAGAACATCATTAATTACAAATCCAATATTGACAAACTGGAGGGAGACCACCAGCTCAGCCAGGAAGGACTTATCTTTGACAACAAGCACACCAACTACACTATGGAGAAGAGGAATGGCATGATGGATCCTGATGATTTCCGTGCTTGCCTCATTTCTATGGGTTATGATCTGGGTGAAGTTGAATTTGCACGCATTATGACTCTGGTGGACCCCAACAACACAGGAGTTGTCACCTTCCAGGCCTTTATTGACTTCATGACCAGGGAGACAGCAGAAACTGACACTGCTGAACAGGTCATGGCCTCCTTCAAGATATTAGCTTCTGACAAGGCTTACATTACAGTGGAGGAGTTGAGAAGGGAGCTGCCCCCAGAACAAGCCGAATACTGTATCAGCCGCATGACAAAGTACATGGGTGGCGATGCTCCCCCAGGCGCCCTTGATTATATCTCCTTCTCTAGTGCCCTATATGGAGAAAGCGACCTATAGAGCCCTTTTTGTCACATTTACCACCTACACCCTTCCCTAAAATTCTTGAAACCCTTAAAACATCCAACTCCAAGAACAATGTCAGATGTAATGGATGGCCTTGCTGCAATGATTTGGTCCTGTGCGTCACCAGTTGATATGAGGGACATCCATCAATTGCTGTCTGATCCATGTTAGTGGTCTGTCCCTGGTGGTGGTGAAAAGTTCTCACAAGCCAGTGGGGACTGAAGAGTACAAAAACCAGACAGAATACCATTCTTCACATTGGCAGTTAATAAGCAATATGCTCTCCCTTCATACAAATGGCTTACATTTTGGAGGAAGAAAAATAAA

Function

symbol description
actn3a Predicted to enable actin binding activity and calcium ion binding activity. Is expressed in several structures, including musculature system; ovary; pectoral fin; pharyngeal arch 3-7; and segmental plate. Orthologous to human ACTN3 (actinin alpha 3).
actn3b Predicted to enable actin binding activity and calcium ion binding activity. Is expressed in several structures, including musculature system; ovary; pharyngeal arch 3-7; post-vent region; and segmental plate. Orthologous to human ACTN3 (actinin alpha 3).
actn3 Enables identical protein binding activity and transmembrane transporter binding activity. Involved in focal adhesion assembly. Located in focal adhesion.

NR:

description
Actinin alpha 3b

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K05699 ACTN1_4; actinin alpha 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_03300379_03312388.mRNA True 2815 mRNA 0.48 20 3300046 3312388

Neighbor

gene id symbol gene type direction distance location
CI01000006_03270739_03288631 NA coding downstream 10532 3270365 ~ 3289514 (-)
CI01000006_03256291_03262601 NA coding downstream 37445 3256143 ~ 3262601 (-)
CI01000006_03244690_03253311 BBS1 coding downstream 46735 3244573 ~ 3253311 (-)
CI01000006_03205005_03228985 PACS1, PACS1A coding downstream 70538 3204996 ~ 3229508 (-)
CI01000006_03188826_03200931 NA coding downstream 99115 3188777 ~ 3200931 (-)
CI01000006_03319976_03322908 RBM14A coding upstream 7499 3319887 ~ 3325039 (-)
CI01000006_03335446_03344286 DPP3 coding upstream 22470 3334858 ~ 3344286 (-)
CI01000006_03357824_03365324 SART1 coding upstream 45410 3357798 ~ 3365324 (-)
CI01000006_03366101_03366985 NA coding upstream 53675 3366063 ~ 3366985 (-)
CI01000006_03370040_03371517 NA coding upstream 56504 3368892 ~ 3371676 (-)
G43282 NA non-coding downstream 101824 3197876 ~ 3198222 (-)
G43274 NA non-coding downstream 137746 3162070 ~ 3162300 (-)
G43148 NA non-coding downstream 138279 3140950 ~ 3161767 (-)
G43264 NA non-coding downstream 181953 3117424 ~ 3118093 (-)
G43262 NA non-coding downstream 183860 3112511 ~ 3116186 (-)
G43301 NA non-coding upstream 91051 3403439 ~ 3407475 (-)
G43334 NA non-coding upstream 216505 3528893 ~ 3529172 (-)
G43335 NA non-coding upstream 216941 3529329 ~ 3531439 (-)
G43336 NA non-coding upstream 221140 3533528 ~ 3534121 (-)
G43337 NA non-coding upstream 222583 3534971 ~ 3535333 (-)
G43102 NA other downstream 366062 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 673860 2624436 ~ 2626776 (-)
G42934 NA other downstream 717840 2523776 ~ 2582206 (-)
CI01000006_02285649_02294759 NA other downstream 1005048 2284994 ~ 2296494 (-)
G42667 NA other downstream 1409290 1888988 ~ 1890756 (-)
G43549 NA other upstream 1040122 4352510 ~ 4355428 (-)
CI01000006_04560607_04560993 NA other upstream 1247121 4559509 ~ 4562068 (-)
CI01000006_06974359_06976736 NA other upstream 3660836 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 4190757 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 7170468 10453613 ~ 10484006 (-)

Expression


Co-expression Network