CI01000006_03256291_03262601


Basic Information

Item Value
gene id CI01000006_03256291_03262601
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3256143 ~ 3262601 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_03256291_03262601.mRNA
AAATCACATGTCCTGATCCTCGTGGTTTTGAAAATGGAGAGGTGTATCCATATTTGCCTAGGTATTTCGTGAACGACACAACCCACTACTCATGTCATTCAGGCTACACGTTCCGTGGCTCAGGGGTTCGTGTTTGCCAATTGAATGGGAAGTGGAGTGGAAGCACACCAGTCTGTGGAAGAAACTCTGATCACTGTCCTGATCCCGGCACTCCCGCTGGCTCTACAAGAACAGGCCACATTTTTAATATTGACGACAAAGTCATATACCGCTGTGACAAAACATTGACTCTGATTGGTTCCAAAGAGCGAGTCTGTCAGGATGATGGCCAGTGGTCAGGAACAGAGCCAGAATGTTACGCTGATTTCACATACGACACCCCAGAGGAAGCCTCAGAAGCTTTCAGCAGTTCTCTTAAGTCAAATCTAGCAGTTTCTCAACAAGATGAAGGAACAGATCAGTATGGGAAAAAAATACATGTGGATAAGGGTGGAAAACTCGATATCTATATTGCCCTGGATGTATCTGACAGCATAGAAGAAGATGATTTTGAAAAGGCAAAAGATGTCATCAAAACACTCATAGATAAGATCAGTTATTATGAGGTCTCCCCAAACTATGAGATCCTGATTTTTGCCACAGACGTTTACCGAATAGTCTCCATGAGGGACTTCAAGAGTAAAGGTGATCGATCAGGAACTAATATCGCCCAAGCCTATAAGAACATTTTAGAAAGTATGCAAATAGAACAGATAACCAATAAAGAAGACTTCTTGGAGACCCAGCATATCGTCATCATGTTCTCTGATGGTCAGGCCAACATGGGTGGTAATCCAAAAGTACATGTGGACAACATCAAAAATCTTGTGATAAATGATCCTTCACGTGAGGACAAACTTGAACTGTATGTGTTTGGGATGGGAGATGATGTGAATGCTGAGGACATTAATGATTTGAAGACTGACCGGGGAAATGAGAAGTTTTTCTTCAAGCTTCAGAGCATTGAAAAATTGCAGGAGACATTTGACAACATGATTGATGAGGGCACCAGTGTAGCATTATGTGGACTTTACAGAGATTACGATGATAGTTATTCATCCCATGAACGTCGTCAATACCCCTGGTTGGCAAAGATCAGTGTGACTCGCAGCGATGGAACAATCTCTAACTGCATGGGGTCATTAGTCACCTCAACCTTTATCTTGACAGCAGCTCACTGCTTCAAATTTGGTGACACACCTGAAAGGATAACTGTTGATATTGGTTCAAATATTCGAAGAATAAAAGTGAAGCAGTACATACCTCATCCTCGCTATAACCTCAGAGCAAAAAAGCACATGGGAATACCTGAATATTATGAATTTGATGTAGCTCTTATTCAACTGGTGGAACCTCTAATTATGGGTGTCGATCTTCGGCCAATCTGCATCCCCTGCACCAAGGAAACCAGTGGAGCTCTGAGACTTTCAGATAGAGAAGGAACGTGCAGAAAACATCAGGAAGTGCTAATGAGTGCAGAAACGGTGAATGCTGCTTTCATATCTGAAAGGAAGAAGAAAATTGAGAAAAAGTTCATCAAAATCAAGCAGGGAAAATGGCGGGATTCTTGTATTGAAGATGCCAAAAAAGCTGAAGGAATTACTGCGACAAATGCTGAAGACATTGTTACAGATAATTTTCTGTGCAGCGGTGGTACTGAACCGAATAGAGATGATATTGCCTGCAAAGGTGACTCTGGTGGGGCTACTTTTGTGGTTCCTGGTAATCGAATGGTCCAGGTTGGTATCATAAGCTGGGGAGTGAAAGATCTGTGCGCGCGCAACCCAAACGCTATGTCTGAACCACAGTCCAGAGATTACCATACAAGTCTGTTCAGTGCAGAAGTACGCTCATTCCTTAAAGACTATGTAGGAGATGGCACGCTGGGAACCCCTCTTATGTTCTTATGAACATTGTGCTTAACAGTTGTCTATTTGCCCGTTCAGAAACGTTGTGCATACCTCTCAGTTAAATGAAACATTTCTATTTTTTCCTGCTTTGGACTTTGTGGCAATTTATAAGAAATGTGACACATTAAATGCATTGTGAAATAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_03256291_03262601.mRNA True 2097 mRNA 0.42 16 3256143 3262601

Neighbor

gene id symbol gene type direction distance location
CI01000006_03244690_03253311 BBS1 coding downstream 2832 3244573 ~ 3253311 (-)
CI01000006_03205005_03228985 PACS1, PACS1A coding downstream 26635 3204996 ~ 3229508 (-)
CI01000006_03188826_03200931 NA coding downstream 55212 3188777 ~ 3200931 (-)
CI01000006_03043665_03066360 NA coding downstream 188984 3043238 ~ 3067159 (-)
CI01000006_03018948_03029493 NA coding downstream 224982 3018399 ~ 3031161 (-)
CI01000006_03270739_03288631 NA coding upstream 7764 3270365 ~ 3289514 (-)
CI01000006_03300379_03312388 ACTN3, ACTN3A, ACTN3B, ACTN3.L coding upstream 37445 3300046 ~ 3312388 (-)
CI01000006_03319976_03322908 RBM14A coding upstream 57286 3319887 ~ 3325039 (-)
CI01000006_03335446_03344286 DPP3 coding upstream 72257 3334858 ~ 3344286 (-)
CI01000006_03357824_03365324 SART1 coding upstream 95197 3357798 ~ 3365324 (-)
G43282 NA non-coding downstream 57921 3197876 ~ 3198222 (-)
G43274 NA non-coding downstream 93843 3162070 ~ 3162300 (-)
G43148 NA non-coding downstream 94376 3140950 ~ 3161767 (-)
G43264 NA non-coding downstream 138050 3117424 ~ 3118093 (-)
G43262 NA non-coding downstream 139957 3112511 ~ 3116186 (-)
G43301 NA non-coding upstream 140838 3403439 ~ 3407475 (-)
G43334 NA non-coding upstream 266292 3528893 ~ 3529172 (-)
G43335 NA non-coding upstream 266728 3529329 ~ 3531439 (-)
G43336 NA non-coding upstream 270927 3533528 ~ 3534121 (-)
G43337 NA non-coding upstream 272370 3534971 ~ 3535333 (-)
G43102 NA other downstream 322159 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 629957 2624436 ~ 2626776 (-)
G42934 NA other downstream 673937 2523776 ~ 2582206 (-)
CI01000006_02285649_02294759 NA other downstream 961145 2284994 ~ 2296494 (-)
G42667 NA other downstream 1365387 1888988 ~ 1890756 (-)
G43549 NA other upstream 1089909 4352510 ~ 4355428 (-)
CI01000006_04560607_04560993 NA other upstream 1296908 4559509 ~ 4562068 (-)
CI01000006_06974359_06976736 NA other upstream 3710623 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 4240544 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 7220255 10453613 ~ 10484006 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018991 cfbl coding NC_007132.7 CM002905.2 27448856 ~ 27461206 (+)