CI01000006_03319976_03322908 (RBM14A)


Basic Information

Item Value
gene id CI01000006_03319976_03322908
gene name RBM14A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3319887 ~ 3325039 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_03319976_03322908.mRNA
AGCCTCCCAGTCCAATACAGACTACGCCACTTTCGCAGATTTGTAGGTTAATAAATGTATATATGTAAATATATATAGATTAGAAACTATAACAAAGAACTATTTAACTTAAAATTGGAGAATACAATAGATATAAATCTTGACAATGCGAATCTTAATCAATACATATGATCAGTGAAAAGTCATTATTAAACACTTCGTACAATCTTCATTATTAATTTATTTTATTTTTTTAAATCTTGAAATCATTACGCCTTCGTGACTAAGCGCACTTAGTCAGTCTGCGTTCTCTCTCAGAAGAGGGTTAATGTTTTACTCTACTGTGAATGCCACATGGCACTAAAACACTAGTCTTTACTTTAAAAGTGATAGTGAAGAAGAGCCACTTACCTCTGTTCATCAATCGATGTTCAAAAATAACAAACTATAATACTTCGTGACTTTCCCCAAAGTGTCAGATCCATGAAATGCTCTGAATTTCTTTGGGAAATGTGGAAAGTCCAGTAATATATAATTAGGGGGATGTAGCTTGTTATTCCAACATCCACACGTTTGAAAAGATGCCTACGGGAATCTGCATGAAACTGTGATTTACACAGTTTCTTCTTCCTACACATGTGTTTTCCAGGCGAGCGTTCTCGTACTTGACAAGTCGTTTCATATATAGTTTCATACCTAGGCATGCGCATGCGTTGTTGTGACAATCTATAACAAGAACACAAAGAGAGATAAATATAATTATATAGTTCATTGCTCCGAGTCCACATTCCCTCTTTGAAATTAATAATAATAATAATAATAGACCTAGTAGATGTCTTCCACATTTCCTCTTTAAAATTAATACAGTGTCGTCATAATTACTTTTTAGCTAAAACCTGGACTAGTTCATTTTATTTTATATTGCTAGTCAGATTATAATAAACAAGGACCCACTTGCATATCAAAATATGTATGACACTTTGATAAACAGATATTCAACAAAAAGAACACACACACGTTGGGTTTCCATGTTTTATGGGGACTTTATATATATATATAACTTTATATTTATAATATAATATATATTTTAATTTATATATCTGGCTGTTTCTCTTCTTTCTGTATCCCGTGCACGTATTTCCAATATTTTTAAAACAACGTTCCCTATTTAGGTATACTTAATAATGACAACGTCCGGATCCTTCCGCTTATTATTTGCACTCGCACGGACTGGACGCTCGTCACACCGTCAAACAGTCGGGAAACGGATATGAAGTCTGTCCACTGCGTTAGGTAAGAGAGAGGGTCGACAGAACACTTTTGCCGTGTTTGATACCTTAGCGCTTCGAATCTATCCATTGGCGTTTGGTCGTATTTGTTCCCCTTTCCCTGAATTGTTTTAACAGTGAGTATGATGAGCGATCATTTTTGTATTTCCTTGTTTATGGTTGCTAACAAGCTAGCGCGTGGCTAGCTAACTACGTTTGTGCTAATTATGCGATTTTTAAAATGCTTTTAAGGCTTATATGAACACAAATGGCGCGTCTTATGGGGCTGGCAGGTGCGAAGGTTTTGAGGAAGCTGTTTACAGTCAGCTGGCTAACACTATTCGTGTAAATCACTGCCAGTTGTCATTAGCTAAAGTCCGTGAGCTCAGCGCTTTCTAGAAGCGACTGCGCAGCTCAGATTAGCAGCGCGTCCCCGCATCCGGCGGGCTAGAATGGGGTTTGTTTAATAACTGTAATGGTTGGAGATTTTTGCATTTTCTCTTTTTGCTTGTGTCTATCACCCCCATTACGACGAACTATAATTTGGGGCTATTTACACAGAACGCGTTTTGCTATTAAAAACGCGAAACGCAGGGTAGTGGAATGAATAAACCACGCAAGGACTAAAGACGCGTTTTTGAATATTACAACTTTTTAAACTTAGTCAAATAATTTAAATAAAAAAATTACATAGAAAAACAACGGGTATTTAGCGCAATGTAATGGAAAAAACGTTATTCAATTTATTCAACTCACCGTTTCAACTTACGTCTGAAAAGCCCGCCTTAATTTTCAGACTCGTTTAGTTTTAGTATGAATTGGTTCTTGCCGCCAAAAAGTAAGAAATAAGGCTTGTTCCCTATTTCTAGGTATTCTGGGGTGCAATGGACGACAGCAACGCAGTGAAGCTCTTTGTTGGGAATCTGGATTTGGAAACCACACAAGATGACCTAATAGCACTTTTTGCCCCTTATGGAGAAGTGGTGCACATAACTGTACTGAGGCAGTTTGCCTTTGTCCATCTGCAGGGAGAAGGGGCTGCTGACCGTGCCATCCGTGATCTGAATGGTCGAGAGTACCGTGGCCGGAGCCTTGTAGTTGAGGAATCCAAAGGGAGGCCCCTCAATTCCACCAAAGTATTTGTGGGGAATCTGTGTGCTTCCTGTTCAGTTGAAGACCTGTATGATCTCTTCTCGGCTTACGGCAAAGTTCTTGATTGTGACAAAGTAAAGACAAAGCTCTCCTCTTTAACAGGCTACGCCTTTGTGCACATGGAGCGCAAAGAGGATGCAGAACAAGCCATTGAAGGTCTTCATGGGACCTCGTTTATGGGACGTCCACTCGCAGTGGAGCTCTCTAAGGTACAGCAGACCACAAACAAGGTCCCTTGTGCCAGCTGTGGTGCTCATGGCCACTTTGCAGGTGAATGCCCGATCAACAGGCCTCCCATGGAGCACCACCAGAGTCAGGCTGCCGTATTAGCTGCAGCCGCTGCTGCCGCTGCTGGGCTTCCTCTTCAGGTGCAGCAGAGTGTCCACAACTCTTTCTACAACACTGCTAGCACTGACCCGACGTTTGCTGCTCTGAAAGACTTGACCACTTCCAGGGTTGATGGCAAACCTGTCAGTGCTGCAGTCTACGGTGCCCTGGCAAGTCAAGTCTACAGTGCTGTCGCAGACCAGGTGCTCAGCTCGACGACAAGCCAGGCTGCGGACGGCTATCCCACTGAAGGAGAGGCTCCTCCGGGCGCTGCCGCAATTAACCCTGCCTACGGAGCAAATTCCTCTCTGTACGGTGCCAGTCCAGCTTATGGGACCATGGGAGGTACTGAGCCTGACCCCCAAGCCATTTTTGAAGCTGCTCGGGCCCGATTCTTTGAGCAGGGACAACAAGTTCTGGCCGAACAGCAGGCTGTGACCAAATCCGACCGAGACCGAAGTCCAATACGGCGCTCGGCCCCATTACTGCCTGACCCGGTTCCCCAGCCATTCTCCCAGACACGACCTAAAAGACGGGCCCTGCTCCCAACACCACCTGGTGGTCCAGAACTACCTGCAGTTAAAAATGGAGACCCAATTGCAAGGTGCTATGCAGAGTACTACCAACAGTACCAGCAGTACCAACAGTACCAACAATACCAGCAGTACCAGCATTATCAGCAGTACCAGTACAGCTATCCGCCGCCGCCGCCACCTCCTCCGATGCCCATGGTGCCTCCAGGCCCAATGGATGCACAACAGATGGCAGCCCCTGGCACCACAGCTTCACCAAGAGTGTATGAGCCAACTTCACACAAGGAGCCCCTCCTACGCCGTCCTGATTACTCTCACCAACACACATCTGAGTCCCCATATCGATAGCCCCTACCATCTCACATGAGTGTGTGCACACGTGTATGGTTGTGAAAATGTGTGCGTGCGTCAGTTTTGGTCCTACATGACAAAATAAA

Function

symbol description
rbm14a Predicted to enable RNA binding activity and zinc ion binding activity. Acts upstream of with a negative effect on BMP signaling pathway. Predicted to be located in nucleus. Is expressed widely. Orthologous to several human genes including RBM14-RBM4 (RBM14-RBM4 readthrough).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_03319976_03322908.mRNA True 3696 mRNA 0.44 3 3319887 3325039

Neighbor

gene id symbol gene type direction distance location
CI01000006_03300379_03312388 ACTN3, ACTN3A, ACTN3B, ACTN3.L coding downstream 7499 3300046 ~ 3312388 (-)
CI01000006_03270739_03288631 NA coding downstream 30373 3270365 ~ 3289514 (-)
CI01000006_03256291_03262601 NA coding downstream 57286 3256143 ~ 3262601 (-)
CI01000006_03244690_03253311 BBS1 coding downstream 66576 3244573 ~ 3253311 (-)
CI01000006_03205005_03228985 PACS1, PACS1A coding downstream 90379 3204996 ~ 3229508 (-)
CI01000006_03335446_03344286 DPP3 coding upstream 9819 3334858 ~ 3344286 (-)
CI01000006_03357824_03365324 SART1 coding upstream 32759 3357798 ~ 3365324 (-)
CI01000006_03366101_03366985 NA coding upstream 41024 3366063 ~ 3366985 (-)
CI01000006_03370040_03371517 NA coding upstream 43853 3368892 ~ 3371676 (-)
CI01000006_03379749_03383412 NA coding upstream 54686 3379725 ~ 3383879 (-)
G43282 NA non-coding downstream 121665 3197876 ~ 3198222 (-)
G43274 NA non-coding downstream 157587 3162070 ~ 3162300 (-)
G43148 NA non-coding downstream 158120 3140950 ~ 3161767 (-)
G43264 NA non-coding downstream 201794 3117424 ~ 3118093 (-)
G43262 NA non-coding downstream 203701 3112511 ~ 3116186 (-)
G43301 NA non-coding upstream 78400 3403439 ~ 3407475 (-)
G43334 NA non-coding upstream 203854 3528893 ~ 3529172 (-)
G43335 NA non-coding upstream 204290 3529329 ~ 3531439 (-)
G43336 NA non-coding upstream 208489 3533528 ~ 3534121 (-)
G43337 NA non-coding upstream 209932 3534971 ~ 3535333 (-)
G43102 NA other downstream 385903 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 693701 2624436 ~ 2626776 (-)
G42934 NA other downstream 737681 2523776 ~ 2582206 (-)
CI01000006_02285649_02294759 NA other downstream 1024889 2284994 ~ 2296494 (-)
G42667 NA other downstream 1429131 1888988 ~ 1890756 (-)
G43549 NA other upstream 1027471 4352510 ~ 4355428 (-)
CI01000006_04560607_04560993 NA other upstream 1234470 4559509 ~ 4562068 (-)
CI01000006_06974359_06976736 NA other upstream 3648185 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 4178106 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 7157817 10453613 ~ 10484006 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location