RNA id: TU48916


Basic Information

Item Value
RNA id TU48916
length 446
lncRNA type intronic
GC content 0.29
exon number 2
gene id G43084
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2856968 ~ 2859398 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTTTTAGCGCTGTTATAGAAAATTCCCTTAACTGTAAAAAGGGCAAATACAAAGATCGCTTTCCTCAGTGGACATTCAAATGGATTTTTATAATGGATATAATATTATGAACATCGACCTGAAGAATGAATGTTATATCAGACACAGGTGTCTGAATGATGTCACATCCTGTCAGAAGATACTGACCGCATGACTTCATCCAAAATGGTCTCTTCATATTGGTTACTCTGAATGACATCAATGAAATTCATCTTTCCGGACATTCTTTCTCATAACAAAGCAACGACTTCTACACATCATTTTAATATCATTTTGCACCATGTTGATATATGATGTTATAAAATCATGCCAGAATAAAACATATATACATTTATTGCATTTTAAGATATTTTAATCACAAATTAAATGGCTGTATTGGCCTTTGGACGGTTAAACCGAATGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48834 lncRNA downstream 147083 2709524 ~ 2710052 (-) True G43005
TU48824 lncRNA downstream 166918 2689945 ~ 2690217 (-) True CI01000006_02689895_02705309
TU48813 lncRNA downstream 175635 2677722 ~ 2681500 (-) True G42986
TU48816 lncRNA downstream 185422 2670283 ~ 2671713 (-) True G42987
TU48754 lncRNA downstream 276991 2523776 ~ 2580144 (-) False G42934
TU48927 lncRNA upstream 24427 2883825 ~ 2980614 (-) True G43092
TU49109 lncRNA upstream 253113 3112511 ~ 3116186 (-) True G43262
TU49112 lncRNA upstream 258026 3117424 ~ 3118093 (-) True G43264
TU48994 lncRNA upstream 281552 3140950 ~ 3161767 (-) True G43148
TU49122 lncRNA upstream 302672 3162070 ~ 3162300 (-) True G43274
CI01000006_02766733_02767600.mRNA mRNA downstream 88397 2766365 ~ 2768738 (-) True CI01000006_02766733_02767600
CI01000006_02720061_02749853.mRNA mRNA downstream 107261 2719967 ~ 2749874 (-) True CI01000006_02720061_02749853
CI01000006_02689895_02705309.mRNA mRNA downstream 148568 2689655 ~ 2708567 (-) False CI01000006_02689895_02705309
CI01000006_02648355_02660501.mRNA mRNA downstream 196334 2646408 ~ 2660801 (-) True CI01000006_02648355_02660501
CI01000006_02634636_02643446.mRNA mRNA downstream 213689 2634288 ~ 2643446 (-) True CI01000006_02634636_02643446
CI01000006_03018948_03029493.mRNA mRNA upstream 159001 3018399 ~ 3031161 (-) True CI01000006_03018948_03029493
CI01000006_03043665_03066360.mRNA mRNA upstream 183840 3043238 ~ 3067159 (-) True CI01000006_03043665_03066360
CI01000006_03188826_03200931.mRNA mRNA upstream 329379 3188777 ~ 3200931 (-) True CI01000006_03188826_03200931
CI01000006_03205005_03228985.mRNA mRNA upstream 345598 3204996 ~ 3229508 (-) True CI01000006_03205005_03228985
CI01000006_03244690_03253311.mRNA mRNA upstream 385175 3244573 ~ 3253311 (-) True CI01000006_03244690_03253311
TU48776 other downstream 230949 2569774 ~ 2570203 (-) False G42952
TU48777 other downstream 230949 2569774 ~ 2570195 (-) False G42952
TU48778 other downstream 230949 2569774 ~ 2570192 (-) True G42952
TU48753 other downstream 274929 2568913 ~ 2582206 (-) True G42934
TU48637 other downstream 562137 2284832 ~ 2290690 (-) True G42837
TU48938 other upstream 49053 2908451 ~ 2933984 (-) True G43102
TU49430 other upstream 1493112 4352510 ~ 4355428 (-) True G43549
TU49494 other upstream 1700111 4559509 ~ 4562068 (-) True CI01000006_04560607_04560993
TU51020 other upstream 4113826 6973224 ~ 6976872 (-) False CI01000006_06974359_06976736
TU51023 other upstream 4114052 6973450 ~ 6976872 (-) False CI01000006_06974359_06976736

Expression Profile