RNA id: CI01000006_02516145_02524371.mRNA


Basic Information

Item Value
RNA id CI01000006_02516145_02524371.mRNA
length 3077
RNA type mRNA
GC content 0.47
exon number 11
gene id CI01000006_02516145_02524371
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2516129 ~ 2525809 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGCTGTGCTTTGTTTCCGTAGACACAGCACAGGTGATTAGTATCGCTCTAAGACACTGTTCTTCTGTACCACATGACAGACACTTTGACGTATATCTGCGACCACAGACAGGATGAAAAAAAAACACCATCTATACAATGTTATGTCTTACACAAGCACAAGCACACTATGTTAAATTACACCTGTGTTAGTATTGGGAGGTCAAGCGTGTCAAACGTCAGAAAGTAGGACCACATAAAAGCTGGGGAACACAATACTCTCTCTTTCAGAGTCCCCCTCAAATCAAGCCTCGGGGCACACAGGGTACGGAACACCATCCTGAAGGGATCAGACACTGAAAGACTTTTACATGTCTGTAAATGAATTAAAAGGTGGGGGGAAGGTGTGGGAGAGAGAAAGACAGCACAATACTATGCCTCCTTGTCCTCACCCGCTAATGTAATTGTAGAGTTTAATATCCAGGTGAATCTACCAAGCACTCAAAATAACTCTGAAGGGACCTGCCATTTGAACTGTAGCAGTTCCTCACCTCAATGTGAGGGAGAAAAAAAAAATCACTTTTTAAACACTTAGTAGTTGTACTTGTGAGTATAAGAAGCGCTATTCTAGTGGTGTAGCTTTTGATTAGCGTATAGGGGGACCCAAGTTCCCAGCCTAATATACAATCTAAACAAAATTTAACTCAAACTGACAGCCAGTGTTAATGCACATTGGTTGGATGGGAAATAGCAGCTTTGGCAAAATCTAATAGCTCCTGTTTTACTGCACTGCTAAACAGTATGTGTTTCAAGTGTGGGCAGATGTGCAAATTATGGCAGAATTTTTGAGGTTCAGAGTAAATTCTAATGGATTTAATATATTTAGACATGTGAATGGGTGACTTCTGTCGCAGCATTTTAAACAAACACATTTTTTTCCATTAATCATGCAACTTAATTATCAGAGAATTGCATTCAATACACCTGACTCAAAACTTTAAGACATATGCCCCTCTGAATGGGCATAACGCTTCTGGGAACAGGAGAAAGACGGGAGTCTTCCATTAGAAGTGTGAATCATCCCATCATAAACTAGCATAGAGGGGTATGTGACCAGGCAATAAGGGATTTGCCTCTCTCCTGCTGTGTCTCCCTCCTCGACCTCAGGGTCAGACTGCAGTGACAAGCTATGACTTGCAGCAGCGCAGACTGAAAGAGAAGGAGCTCACACTCTTCAGCCCCCATTCAAGAAAATCTAAGCCATGACGTTTGAAAGGTTTCACAGCAACGACCATCTCCCTGAAGTGCAATCCAATGGAGAAAATGTGTGGCAGCCACTTGCAGAAGTGTAGAGAGTCAGCACCAGTGCAGAAATAAGAACAAGCCCTTTGCAAGTACTTGAGGAACGGGCTCAATACCATGAGAGGCAGCCCACAATTTGGCTGAATCTCAGTAACAATGCAACTCATTAGGCGAGAATATGCCGAAATCAGAGCAGCAGGAAAGCAGATTGCAGAATCCACACCTCAGCTGATCTGTAACACTGACCCCTGGCTGATCTCTCCCCCACACACTGCTCTACCACCCAGTGTCGTCAGGAATCCCAACAGTGAGCACGCAACCACAGAGTGGAAACCTTGTGAGAGCACAGAAAAAACAAGGCCACAGTGTTACACCTCCAATGCCTACGCAGGAGACTTTAACAAAAGTATCCCATTATCTAAAAACACCCATAAAGGAACCTGTACCTTGATCCCAAAAATAGAGGCATTTCATAATTCCACAGAGCAACGTTTCATCAACATGAAAGGGGGTGATAACTGGCATGTCCCAACGCATCTGACCATGCAGTGCAGGCCTTCATTAGAGAAGATCAAAGGGCCACGTTGTAGGCATAAACAGTGTGTGTGTGAGTGGAAGTGCTTCCCTCATGACAACCTCCTTGTGGTGAGTGAATCTGTCAACAGTAATGACACTGAGCGGGATGTGTGGGTCACCCTCCCCTCGTTGCCAGGCGTGATGGGACTTGTCACCCGACCTGCACTCTCCTCTCTGGCACCTATGTGTGTGTACATATACATGCAAAAGTGTGAGATCTACGGGTATCCAAATACAGGTGATGTTCTTTCAAAGAGGAACTCCCTTAGTTTCTCCTTGAAATGCACTCTCTTCCCATCCGTCTCCCACTCTCTTTCCCTCTCTCTTGGCTCCGAAATATTCCTCTTTTCCTCCATTAAAAAGCATCTGCTGTTTCTCAACTTGGGTTGCCCCAAGGCACTCACTGCTCTGATCGGGTGGATCATAGCAGATAAGTGTAGCCCACCTCCCCCTCTACCAGCCACCCGCAGTACCTGCACACCATCACACATATATACCGCCCCGAGACACTGCTGGCATTTCACAAGCTTGCATGTTTCTCCTAGGGCACGGTATGTGTGTGGGGAGATGGTGGATCTGAGTGGGAGATCATCTGTGAACGATTATAGTGCCCAGGCCTGGTGCCTGGGAGCAGGGCATGTTTCTAATGTTGAACTCCTTAAGGGTCGGAAAAGGGTTGAACCTCTAGTCAATCTCTTTGAAGGTATATCTGATCGAAAAATCACACACATCCGTGATGCTGTCACCATGGAAACCATTCAGAACAAGAGAGGCGATAGAGATAGAGAGAGAGACATTGCACCACATGAAAACAGAGACGTCCATGAGAGTTGTGCTAGCGGCAAGCGTCCTCTGGGGCTCGGCTGGTTAAAAACCAACGGCTTGAGATTTTCTTTCGGAGGGGCCTCAGATAATTTGAGGGGAGAGCTGGTGAGAGATCAAGTGTGTGGCCCCCGGGTACGAGTGGCAGGACGGCCCCTCCATGCTCTGGCTCTTTTGGAGGGAGGGATTACAGGAAACCCGGAGTGCAACTGTGCCGTCTCAGTGCGACAGGCAGACAGCCCGGTCACAGATACGCTCCCTGCTGTTTCAACGACAGCAGCACTGCATGCCAGAAGCGCATTGACTCATTCGGACTCGAAGAACAGTCCCTCATCAGTCATCGTCTTGAACGATTCTTCGCTGTCTGGGCAGAATAATTAAAGTGATTGGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48729 lncRNA downstream 29383 2486225 ~ 2486746 (-) True G42913
TU48728 lncRNA downstream 30015 2485899 ~ 2486114 (-) True G42912
TU48726 lncRNA downstream 30812 2485096 ~ 2485317 (-) True G42910
TU48721 lncRNA downstream 83546 2432033 ~ 2432583 (-) True G42905
TU48702 lncRNA downstream 100168 2415741 ~ 2415961 (-) True G42890
TU48816 lncRNA upstream 144474 2670283 ~ 2671713 (-) True G42987
TU48813 lncRNA upstream 151913 2677722 ~ 2681500 (-) True G42986
TU48824 lncRNA upstream 164136 2689945 ~ 2690217 (-) True CI01000006_02689895_02705309
TU48834 lncRNA upstream 183715 2709524 ~ 2710052 (-) True G43005
TU48915 lncRNA upstream 331159 2856968 ~ 2859398 (-) False G43084
CI01000006_02481958_02482821.mRNA mRNA downstream 33001 2481395 ~ 2483128 (-) True CI01000006_02481958_02482821
CI01000006_02448953_02467739.mRNA mRNA downstream 48390 2447950 ~ 2467739 (-) True CI01000006_02448953_02467739
CI01000006_02297635_02343401.mRNA mRNA downstream 172728 2297082 ~ 2343401 (-) False CI01000006_02297635_02343401
CI01000006_02285649_02294759.mRNA mRNA downstream 219635 2285005 ~ 2296494 (-) False CI01000006_02285649_02294759
CI01000006_02262424_02271592.mRNA mRNA downstream 244537 2261937 ~ 2271592 (-) True CI01000006_02262424_02271592
CI01000006_02617160_02621622.mRNA mRNA upstream 91321 2617130 ~ 2621622 (-) True CI01000006_02617160_02621622
CI01000006_02624725_02626124.mRNA mRNA upstream 98646 2624455 ~ 2626776 (-) False CI01000006_02624725_02626124
CI01000006_02634636_02643446.mRNA mRNA upstream 108479 2634288 ~ 2643446 (-) True CI01000006_02634636_02643446
CI01000006_02648355_02660501.mRNA mRNA upstream 120599 2646408 ~ 2660801 (-) True CI01000006_02648355_02660501
CI01000006_02689895_02705309.mRNA mRNA upstream 163846 2689655 ~ 2708567 (-) False CI01000006_02689895_02705309
TU48637 other downstream 221131 2284832 ~ 2290690 (-) True G42837
TU48426 other downstream 625373 1888988 ~ 1890756 (-) True G42667
TU48457 other downstream 727495 1785501 ~ 1788634 (-) True G42692
TU47983 other downstream 2159990 355813 ~ 356139 (-) True G42285
TU48753 other upstream 43104 2568913 ~ 2582206 (-) True G42934
TU48776 other upstream 43965 2569774 ~ 2570203 (-) False G42952
TU48777 other upstream 43965 2569774 ~ 2570195 (-) False G42952
TU48778 other upstream 43965 2569774 ~ 2570192 (-) True G42952
TU48938 other upstream 382642 2908451 ~ 2933984 (-) True G43102

Expression Profile