RNA id: CI01000006_02448953_02467739.mRNA


Basic Information

Item Value
RNA id CI01000006_02448953_02467739.mRNA
length 2137
RNA type mRNA
GC content 0.44
exon number 10
gene id CI01000006_02448953_02467739
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2447950 ~ 2467739 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCCCCTCCTCCTCTCTCCCAAAATCTCTCCCGTCTCTGTTAAACAGGATGCTGCTACTTCGTTTGCGGTGCCAACAGCTGAGGATCTATTGAGGTGCACCACACACACGGCCATGCTGCAGCAGATCTTGAATGACATGTACATCGACCCGGATGTGCTGGATGCTCTGAACGATGAGCAGAAGAAGACGCTCTTCCTGAAGATGCGTGAAGAACAGGTGCGACGCTGGAAAGAGCGTGAGGAGAAGCTGGAGAGGGAACCACTCAAGCCCAAACCAAAGACAGCTAATAGCAAGAGTGTCAGTTGGCTGCTGGGACGAGATGGAGACGTACAGGTCATTGTCATCGGAGAGATGGATGAACTCAAATCCTCCAAGATCATCTGTTCAGGGTTTGGAGAGAGAAAAACGGCCAGCGTCCTCAACAATTCACACAACCACCCCGGCACTTTGAAGAGCAACTTGACAAACCGAACATCAGCAGAACCTGTACGATCAGGACGAGAAAACCTTCCTCCCAAAGCACATTCAGGAGTTCAGCTGAACTTTAAGATTTTTGAGATCTCGCCGCCACCTCTTTCCTGGTATACTAAGGACAACAGTGACAAGGAGTTAAGGACTCTGCCGCCTCCACAGTGTAAACATGGTGTCGGTGCAAAGGAATGTCCTCCCCAGACTGTCTGTGGTCTCTTCAGGCACACTGCCCTGGGTAGAGGGGGGCTGGAGGTATCCCATCAGCCTCAGGAGTCCAGAGAGGAGGCTGAGTCAGGACACTCGGAGGATGACTCAGCACTCTTGTCCTCAATTTGCTATCGGGCCCACACGAGATCTTGCCTCCTGACACCCTCGGCTCTCAGCAGACCTGCGTATACAGATACAGAGGACAAGACGACCAATCAGCTACCTGACACCTCCAGACTCCATCCCCAAGACACCCCCAAACCACAGATCAACAGAGGTGATTTCCGAGTGGTTGCCGCCTCTAAACGGGCATTATCTGTGGATGTGGGGTCTGAGGTAGCTGAGGAGAACTGTTTGGGACGAGGACGGGTTGCTCAGCTCATGAAAACTTTTAGTGTGTCCAGTAATCAACAAGGGACCAACCCCCGTGCCGCAATCAGGACACCTAGCTAGGGGTCTTTGTCATTGGCTACATTGAAGGGTGCAGGTGCTTAGCCTCTCTCAGGAATTTGAATATTTTAGTTACCAAATTAATGCAAGGTCATGCTTTTTTTTTTCAATATTGATGTTTTTGTTTATTTTAATTTTTTACGTGGCATGAGTGATTTGTATGAATTTTCAGCAGGAATGAAACACCAGTCATATCGCTTGAACATTCAGCAATAATGTTGACCTGGCTGTAATACTAAACTGCATATTTACAAGTGCCTTTTTGTTTTAAAGGGTCACATGAAATCTTGATTAACAGTAGAAGATTGAGTTAACTCCAAAAAAACAAAACAAATCATGCTAAACCAAAGTTAGTCATTCCATCTGTTATATACTTAACATTTTGTATGAAGGCTGTCATGTTTTAGTGAGGAAAAAGTCAGATGTCTGTATAAGTGGTCAAATGATATCAGTTTTTTTTTTTTTTTTTTGGTATCAGAGGGCAGGGTGGCTAATATAATGTCCATATTTACTGTAAATTACAATTTAATTATAGCAATTGGGAGGCACAGAAAGTTTCTGAATTGAAATAAATATGCATTTTACACAATATTTACTCAATTCACTAAAAATACTATAAAATTCACTGACAAAGCTACATTTTGGAACTGACACTATGCGAAACAGTGCCAAATATTGGCTAATTAATCAGCCTGGCTGATATATTGGTCTATCAGTACTCTGTTGCTTGTTTCTTATGTTTTAGTTGTTGTTTTTGTTTTATCCTAGCCAGACCTTTATTTGGAGGTTGATGGTCTTATAATTAAATTTTCCGTCTTTGGTAATCAGGTCAGTAGGGCAGCGGTCACCTTCATGTAAACTGTTTTTTCGCAGTCACATTTGCTTGCACTTAATTCTGGGTTTTTTTACATGTGATCTGGAAGAGTTTATATAATTACTCTGTGTAAGGCTTGAATGTCCTGTCCACACATTCAGGATAAGTGTGGGATATTGCCTCTGTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48721 lncRNA downstream 15367 2432033 ~ 2432583 (-) True G42905
TU48702 lncRNA downstream 31989 2415741 ~ 2415961 (-) True G42890
TU48680 lncRNA downstream 76421 2371320 ~ 2371529 (-) True G42868
TU48675 lncRNA downstream 93689 2343917 ~ 2354261 (-) True G42863
TU48617 lncRNA downstream 286201 2161267 ~ 2161749 (-) True G42818
TU48726 lncRNA upstream 17357 2485096 ~ 2485317 (-) True G42910
TU48728 lncRNA upstream 18160 2485899 ~ 2486114 (-) True G42912
TU48729 lncRNA upstream 18486 2486225 ~ 2486746 (-) True G42913
TU48752 lncRNA upstream 56037 2523776 ~ 2557977 (-) False G42934
TU48754 lncRNA upstream 56037 2523776 ~ 2580144 (-) False G42934
CI01000006_02297635_02343401.mRNA mRNA downstream 104549 2297082 ~ 2343401 (-) False CI01000006_02297635_02343401
CI01000006_02285649_02294759.mRNA mRNA downstream 151456 2285005 ~ 2296494 (-) False CI01000006_02285649_02294759
CI01000006_02262424_02271592.mRNA mRNA downstream 176358 2261937 ~ 2271592 (-) True CI01000006_02262424_02271592
CI01000006_02233131_02238377.mRNA mRNA downstream 209437 2232914 ~ 2238513 (-) True CI01000006_02233131_02238377
CI01000006_02230950_02231194.mRNA mRNA downstream 216756 2230452 ~ 2231194 (-) True CI01000006_02230950_02231194
CI01000006_02481958_02482821.mRNA mRNA upstream 13656 2481395 ~ 2483128 (-) True CI01000006_02481958_02482821
CI01000006_02516145_02524371.mRNA mRNA upstream 48390 2516129 ~ 2525809 (-) True CI01000006_02516145_02524371
CI01000006_02617160_02621622.mRNA mRNA upstream 149391 2617130 ~ 2621622 (-) True CI01000006_02617160_02621622
CI01000006_02624725_02626124.mRNA mRNA upstream 156716 2624455 ~ 2626776 (-) False CI01000006_02624725_02626124
CI01000006_02634636_02643446.mRNA mRNA upstream 166549 2634288 ~ 2643446 (-) True CI01000006_02634636_02643446
TU48637 other downstream 152952 2284832 ~ 2290690 (-) True G42837
TU48426 other downstream 557194 1888988 ~ 1890756 (-) True G42667
TU48457 other downstream 659316 1785501 ~ 1788634 (-) True G42692
TU47983 other downstream 2091811 355813 ~ 356139 (-) True G42285
TU48753 other upstream 101174 2568913 ~ 2582206 (-) True G42934
TU48776 other upstream 102035 2569774 ~ 2570203 (-) False G42952
TU48777 other upstream 102035 2569774 ~ 2570195 (-) False G42952
TU48778 other upstream 102035 2569774 ~ 2570192 (-) True G42952
TU48938 other upstream 440712 2908451 ~ 2933984 (-) True G43102

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037717 False 842 mRNA 0.50 3 NC_007132.7 28749720 ~ 28772641 (+)